2026

• Hashimoto JG, Gonzalez AE, Gorham N, Barbour Z, Roberts AJ, Day LZ, Nedelescu H, Heal M, Davis BA, Carbone L, Jacobs J, Roberto M, Guizzetti M. Astrocyte reactivity by alcohol dependence in the central amygdala. Brain Behav Immun. 2026 May 22;137:106824. doi: 10.1016/j.bbi.2026.106824. Epub ahead of print. PMID: 42173411; PMCID: PMC13379374.
• Newell LF, Twohey E, Sweetnam J, Skendzel S, Stingle J, Vartanian KA, Davis BA, Layman CE, Carbone L, Ray K, Fei SS, Karstens L, He FC, El Jurdi N, Blaes AH, Meyers G, Cook RJ, Baraki A, Dengel DR, Holtan SG. Attenuation of Immune Senescence Markers After Intensive Cancer Therapy Through Resistance Training: A Pilot Study. Cancers (Basel). 2026 May 24;18(11):1710. doi: 10.3390/cancers18111710. PMID: 42279294; PMCID: PMC13255878.
• Anderson TJ, Watowich MM, Chiou KL, Goldman EA, Peterson S, Anderson JA, Snyder-Mackler N, Carbone L, Kohama SG, Sterner KN. Patterns of transcriptomic aging in the hippocampus of rhesus macaques highlight midlife transitions. Geroscience. 2026 Apr;48(2):2913-2929. doi: 10.1007/s11357-025-01834-z. Epub 2025 Aug 18. PMID: 40824352; PMCID: PMC12972383.

2025

• Hashimoto JG, Mangieri RA, Roberts AJ, Lime T, Davis BA, Carbone L, Roberto M, Guizzetti M. Alcohol dependence-induced astrocyte immune activation in the nucleus accumbens. Neurobiol Dis. 2025 Dec;217:107171. doi: 10.1016/j.nbd.2025.107171. Epub 2025 Nov 3. PMID: 41192645; PMCID: PMC12721001.
• Okhovat M, Layman CE, Davis BA, Pederson A, O'Niel A, Holden S, Kessler K, Acharya SN, Wheeler KJ, Nevonen KA, Herrera J, Ward S, Vigh-Conrad K, Adey A, Raber J, Carbone L. Epigenetic and transcriptomic alterations precede amyloidosis in the Alzheimer's disease App^NL-G-F knock-in mouse model. Sci Rep. 2025 Dec 29;15(1):44934. doi: 10.1038/s41598-025-28244-7. PMID: 41462042; PMCID: PMC12748836.
• Hashimoto JG, Margolies N, Zhang X, Karpf J, Song Y, Gorham N, Davis BA, Zhang F, Linhardt RJ, Carbone L, Guizzetti M. Astrocyte Extracellular Matrix Modulates Neuronal Dendritic Development. Glia. 2025 Aug;73(8):1589-1607. doi: 10.1002/glia.70020. Epub 2025 Apr 7. PMID: 40192069; PMCID: PMC12279281.
• Lima AC, Okhovat M, Stendahl AM, Yang R, VanCampen J, Nevonen KA, Herrera J, Li W, Harshman L, Fedorov LM, Vigh-Conrad KA, Ahituv N, Conrad DF, Carbone L. Deletion of an evolutionarily conserved TAD boundary impacts spermatogenesis in mice†. Biol Reprod. 2025 Apr 13;112(4):767-779. doi: 10.1093/biolre/ioaf017. PMID: 39903672; PMCID: PMC11996757.
• Monestime O, Davis BA, Layman C, Wheeler KJ, Hack W, Zweig JA, Soumyanath A, Carbone L, Gray NE. Peripheral Blood DNA Methylation Changes in Response to Centella asiatica Treatment in Aged Mice. Biology (Basel). 2025 Jan 10;14(1):52. doi: 10.3390/biology14010052. PMID: 39857283; PMCID: PMC11762129.

2024

• Layman CE, Ward S, Davis BA, Nevonen KA, Okhovat M, Rincon M, Valent A, Carbone L, Thornburg KL. High-throughput methylome analysis reveals differential methylation for early and late onset preeclampsia for mothers and their children. Physiol Genomics. 2024 Mar 1;56(3):276-282. doi: 10.1152/physiolgenomics.00058.2023. Epub 2024 Jan 8. PMID: 38189116; PMCID: PMC11283906.

2023

• Okhovat M, VanCampen J, Nevonen KA, Harshman L, Li W, Layman CE, Ward S, Herrera J, Wells J, Sheng RR, Mao Y, Ndjamen B, Lima AC, Vigh-Conrad KA, Stendahl AM, Yang R, Fedorov L, Matthews IR, Easow SA, Chan DK, Jan TA, Eichler EE, Rugonyi S, Conrad DF, Ahituv N, Carbone L. TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function. Nat Commun. 2023 Dec 7;14(1):8111. doi: 10.1038/s41467-023-43841-8. PMID: 38062027; PMCID: PMC10703881.
• Lebold KM, Cook M, Pincus AB, Nevonen KA, Davis BA, Carbone L, Calco GN, Pierce AB, Proskocil BJ, Fryer AD, Jacoby DB, Drake MG. Grandmaternal allergen sensitization reprograms epigenetic and airway responses to allergen in second generation offspring. Am J Physiol Lung Cell Mol Physiol. 2023 Oct 10. doi: 10.1152/ajplung.00103.2023. Epub ahead of print. PMID: 37814791.
• Escalona M, VanCampen J, Maurer NW, Haukness M, Okhovat M, Harris RS, Watwood A, Hartley GA, O'Neill RJ, Medvedev P, Makova KD, Vollmers C, Carbone L, Green RE. Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch). J Hered. 2023 Mar 16;114(1):35-43. doi: 10.1093/jhered/esac043. PMID: 36146896; PMCID: PMC10019027.

2022

• Gutierrez J, Davis BA, Nevonen KA, Ward S, Carbone L, Maslen CL. DNA Methylation Analysis of Turner Syndrome BAV. Front Genet. 2022 May 31;13:872750. doi: 10.3389/fgene.2022.872750. PMID: 35711915; PMCID: PMC9194862.

2021

• Kundu P, Torres ERS, Stagaman K, Kasschau K, Okhovat M, Holden S, Ward S, Nevonen KA, Davis BA, Saito T, Saido TC, Carbone L, Sharpton TJ, Raber J. Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in App^NL-G-F, App^NL-F, and wild type mice. Sci Rep. 2021 Feb 25;11(1):4678. doi: 10.1038/s41598-021-83851-4. PubMed PMID: 33633159; PubMed Central PMCID: PMC7907263.
• Schenning KJ, Holden S, Davis BA, Mulford A, Nevonen KA, Quinn JF, Raber J, Carbone L, Alkayed NJ. Gene-Specific DNA Methylation Linked to Postoperative Cognitive Dysfunction in Apolipoprotein E3 and E4 Mice. J Alzheimers Dis. 2021;83(3):1251-1268. doi: 10.3233/JAD-210499. PMID: 34420963; PMCID: PMC8801332.

2020

• Leung KL, Sanchita S, Pham CT, Davis BA, Okhovat M, Ding X, Dumesic P, Grogan TR, Williams KJ, Morselli M, Ma F, Carbone L, Li X, Pellegrini M, Dumesic DA, Chazenbalk GD. Dynamic changes in chromatin accessibility, altered adipogenic gene expression, and total versus de novo fatty acid synthesis in subcutaneous adipose stem cells of normal-weight polycystic ovary syndrome (PCOS) women during adipogenesis: evidence of cellular programming. Clin Epigenetics. 2020 Nov 23;12(1):181. doi: 10.1186/s13148-020-00970-x. PubMed PMID: 33228780; PubMed Central PMCID: PMC7686698.
• Hartley GA, Okhovat M, O'Neill RJ, Carbone L. Comparative Analyses of Gibbon Centromeres Reveal Dynamic Genus-Specific Shifts in Repeat Composition. Mol Biol Evol. 2021 Aug 23;38(9):3972-3992. doi: 10.1093/molbev/msab148. PMID: 33983366; PMCID: PMC8382927.
• Fei S, Harrington C, Minnier J, Carbone L, Searles R, Davis B, Ogle K, Planck S, Rosenbaum JT, Choi D. RNA-Seq of human whole blood: Evaluation of globin RNA depletion on Ribo-Zero library method. J Biomol Tech. 2020 Aug;31(Suppl):S7. PMCID: PMC7424691.
• Okhovat M, Nevonen KA, Davis BA, Michener P, Ward S, Milhaven M, Harshman L, Sohota A, Fernandes JD, Salama SR, O'Neill RJ, Ahituv N, Veeramah KR, Carbone L. Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome. Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):19328-19338. doi: 10.1073/pnas.2006038117. Epub 2020 Jul 20. PMID: 32690705; PMCID: PMC7431028.
• Harris CJ, Davis BA, Zweig JA, Nevonen KA, Quinn JF, Carbone L, Gray NE. Age-Associated DNA Methylation Patterns Are Shared Between the Hippocampus and Peripheral Blood Cells. Front Genet. 2020 Mar 6;11:111. doi: 10.3389/fgene.2020.00111. PMID: 32211019; PMCID: PMC7067920.
• (Acknowledged) Taniguchi S, Elhance A, Van Duzer A, Kumar S, Leitenberger JJ, Oshimori N. Tumor-initiating cells establish an IL-33-TGF-β niche signaling loop to promote cancer progression. Science. 2020 Jul 17;369(6501):eaay1813. doi: 10.1126/science.aay1813. PMID: 32675345.

2019

• Carbone L, Davis BA, Fei SS, White A, Nevonen KA, Takahashi D, Vinson A, True C, Roberts CT Jr, Varlamov O. Synergistic Effects of Hyperandrogenemia and Obesogenic Western-style Diet on Transcription and DNA Methylation in Visceral Adipose Tissue of Nonhuman Primates. Sci Rep. 2019 Dec 17;9(1):19232. doi: 10.1038/s41598-019-55291-8. PMID: 31848372; PMCID: PMC6917716.
• Braun TP, Okhovat M, Coblentz C, Carratt SA, Foley A, Schonrock Z, Curtiss BM, Nevonen K, Davis B, Garcia B, LaTocha D, Weeder BR, Grzadkowski MR, Estabrook JC, Manning HG, Watanabe-Smith K, Jeng S, Smith JL, Leonti AR, Ries RE, McWeeney S, Di Genua C, Drissen R, Nerlov C, Meshinchi S, Carbone L, Druker BJ, Maxson JE. Myeloid lineage enhancers drive oncogene synergy in CEBPA/CSF3R mutant acute myeloid leukemia. Nat Commun. 2019 Nov 29;10(1):5455. doi: 10.1038/s41467-019-13364-2. Erratum in: Nat Commun. 2022 Jun 16;13(1):3471. PMID: 31784538; PMCID: PMC6884457.

2018

• Lazar NH, Nevonen KA, O'Connell B, McCann C, O'Neill RJ, Green RE, Meyer TJ, Okhovat M, Carbone L. Epigenetic maintenance of topological domains in the highly rearranged gibbon genome. Genome Res. 2018 Jul;28(7):983-997. doi: 10.1101/gr.233874.117. Epub 2018 Jun 18. PMID: 29914971; PMCID: PMC6028127.