Biography

Dr. Baratt started his career as a physicist and received his Ph.D. in physics from the University of Pittsburgh. Later his research interest shifted towards computational biology. His research is focused on mathematical modeling of biological processes on different scales, and on computational and machine learning approaches for high-throughput and high dimensional omics data. His areas of expertise include dynamic modeling, statistics, machine learning, numerical methods, and multivariate analysis of omics data.

Selected publications

J. M. Prince, R. M. Levy, J. Bartels, A. Baratt, J. M. Kane, C. Lagoa, J. Rubin, J. Day, J. Wei, M. P.Fink, S. M. Goyert, G. Clermont, T. R. Billiar, Y. Vodovotz, In Silico and In Vivo Approach to Elucidate the Inflammatory Complexity of CD14-deficient Mice, Mol. Med. 12(4-6) (2006), 88-96

S. Chang, A. Baratt, G. Clermont, J-M. Planquois, SB.Yan, M. Williams, W. Macias, Mathematical Model Predicting Outcomes of Sepsis Patients Treated with Xigris(R): ENHANCE Trial, Shock 25(6) Suppl.1:70-71 (2006)

A.Baratt, S.N. Arkhipov, I.V. Maly, An Experimental and Computational Study of Effects of Microtubule Stabilization on T-Cell Polarity, PLoS ONE 3(12): e3861 (2008)

D.L. Gibbs, A. Baratt, R.S. Baric, Y. Kawaoka, R.D. Smith, E.S. Orwoll, M.G. Katze, S.K. McWeeney, Protein co-expression network analysis (ProCoNA), Journal of Clinical Bioinformatics 3:11 (2013), doi:10.1186/2043-9113-3-11

C.M. Nielson, J. Wiedrick, J. Shen, J. Jacobs, E.S. Baker, A. Baraff, P. Piehowski, C.G. Lee, A. Baratt, V. Petyuk, S.K. McWeeney, et al., Identification of Hip BMD Loss and Fracture Risk Markers through Population‐based Serum Proteomics, Journal of Bone and Mineral Research, 32(7): p. 1559-1567 (2017), doi:10.1002/jbmr.3125

J. Shen, J. Lapidus, A. Baraff, C. Lee, A. Baratt, S.K. McWeeney, V. Petyuk, D. Bauer, N. Lane, E. Orwoll, Identification of Novel Serum Peptides and Proteins That Are Associated with Hip Bone Loss in Older Men. Journal of Bone and Mineral Research, Vol. 29, p. S99-S99 (2014)

Contact

email: baratt@ohsu.edu