Chris Harrington, Ph.D. Publications

Harrington CA, Chikaraishi DM. Identification and sequence of the initiation site for rat 45S ribosomal RNA synthesis. Nucleic acids research. 1983; 11(10):3317-32.

Chikaraishi DM, Buchanan L, Danna KJ, Harrington CA. Genomic organization of rat rDNA. Nucleic acids research. 1983;11(18):6437-52.

Lewis EJ, Harrington CA, Chikaraishi DM. Transcriptional regulation of the tyrosine hydroxylase gene by glucocorticoid and cyclic AMP.Proceedings of the National Academy of Sciences of the United States of America. 1987;84(11):3550-4.

Jones KJ, Harrington CA, Chikaraishi DM, Pfaff DW. Steroid hormone regulation of ribosomal RNA in rat hypothalamus: early detection using in situ hybridization and precursor-product ribosomal DNA probes. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 1990;10(5):1513-21.

Harrington CA, Rosenow C, Retief J. Monitoring gene expression using DNA microarrays. Current opinion in microbiology. 2000;3(3):285-91.

Dieckgraefe BK, Stenson WF, Korzenik JR, Swanson PE,Harrington CA. Analysis of mucosal gene expression in inflammatory bowel disease by parallel oligonucleotide arrays. Physiological genomics. 2000;4(1):1-11.

Liu WM, Mei R, Di X, Ryder TB, Hubbell E, Dee S, Webster TA,Harrington CA, Ho MH, Baid J, Smeekens SP. Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics (Oxford,England). 2002;18(12):1593-9.
 

Stenzel-Poore MP, Stevens SL, Xiong Z, Lessov NS, Harrington CA, Mori M, Meller R, Rosenzweig HL, Tobar E, Shaw TE, Chu X, Simon RP. Effect of ischaemic preconditioning on genomic response to cerebral ischaemia:similarity to neuroprotective strategies in hibernation and hypoxia-tolerant states. Lancet (London, England). 2003;362(9389):1028-37.
 

Crossman LC, Mori M, Hsieh YC, Lange T, Paschka P,Harrington CA, Krohn K, Niederwieser DW, Hehlmann R, Hochhaus A, Druker BJ,Deininger MW. In chronic myeloid leukemia white cells from cytogenetic responders and non-responders to imatinib have very similar gene expression signatures. Haematologica. 2005;90(4):459-64.

Yang H, Harrington CA, Vartanian K, Coldren CD, Hall R,Churchill GA. Randomization in laboratory procedure is key to obtaining reproducible microarray results. PloS one. 2008;3(11):e3724.

Vartanian K, Slottke R, Johnstone T, Casale A, Planck SR,Choi D, Smith JR, Rosenbaum JT, Harrington CA. Gene expression profiling of whole blood: comparison of target preparation methods for accurate and reproducible microarray analysis. BMC genomics. 2009;10:2.

Rosenbaum JT, Pasadhika S, Crouser ED, Choi D, Harrington CA, Lewis JA, Austin CR, Diebel TN, Vance EE, Braziel RM, Smith JR, Planck SR.Hypothesis: sarcoidosis is a STAT1-mediated disease. Clinical immunology(Orlando, Fla.). 2009;132(2):174-83.

Marsh B, Stevens SL, Packard AE, Gopalan B, Hunter B, Leung PY, Harrington CA, Stenzel-Poore MP. Systemic lipopolysaccharide protects the brain from ischemic injury by reprogramming the response of the brain to stroke: a critical role for IRF3. The Journal of Neuroscience : The Official Journal of the Society for Neuroscience. 2009;29(31):9839-49.

Walter NA, Bottomly D, Laderas T, Mooney MA, Darakjian P,Searles RP, Harrington CA, McWeeney SK, Hitzemann R, Buck KJ. High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs. BMC genomics. 2009;10:379.

Harrington CA, Winther M, Garred MM. Use of bioanalyzer electropherograms for quality control and target evaluation in microarray expression profiling studies of ocular tissues. Journal of ocular biology,diseases, and informatics. 2009;2(4):243-249.

McWeeney SK, Pemberton LC, Loriaux MM, Vartanian K, WillisSG, Yochum G, Wilmot B, Turpaz Y, Pillai R, Druker BJ, Snead JL, MacPartlin M, O'BrienSG, Melo JV, Lange T, Harrington CA, Deininger MW. A gene expression signature of CD34+ cells to predict major cytogenetic response in chronic-phase chronic myeloid leukemia patients treated with imatinib. Blood. 2010;115(2):315-25.

Metten P, Iancu OD, Spence SE, Walter NA, Oberbeck D,Harrington CA, Colville A, McWeeney S, Phillips TJ, Buck KJ, Crabbe JC, BelknapJK, Hitzemann RJ. Dual-trait selection for ethanol consumption and withdrawal:genetic and transcriptional network effects. Alcoholism, clinical andexperimental research. 2014;38(12):2915-24.

Rosenbaum JT, Choi D, Wilson DJ, Grossniklaus HE, Sibley CH,Harrington CA, Planck SR. Molecular diagnosis of orbital inflammatory disease.Experimental and molecular pathology. 2015;98(2):225-9.

Rosenbaum JT, Choi D, Wilson DJ, Grossniklaus HE, Harrington CA, Sibley CH, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, AlabiadC, Dubovy S, Parekh P, Harris GJ, Kazim M, Patel P, White V, Dolman P, Korn BS,Kikkawa D, Edward DP, Alkatan H, Al-Hussain H, Yeatts RP, Selva D, Stauffer P,Planck SR. Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood. JAMA ophthalmology. 2015;133(7):770-7.

Rosenbaum JT, Choi D, Wilson DJ, Grossniklaus HE, Harrington CA, Dailey RA, Ng JD, Steele EA, Czyz CN, Foster JA, Tse D, Alabiad C, DubovyS, Parekh P, Harris GJ, Kazim M, Patel P, White V, Dolman P, Edward DP, AlkatanH, Al Hussain H, Selva D, Yeatts P, Korn B, Kikkawa D, Stauffer P, Planck SR.Fibrosis, gene expression and orbital inflammatory disease. The British Journal of Ophthalmology. 2015;99(10):1424-9.

Rosenbaum JT, Sibley CH, Choi D, Harrington CA, Planck SR.Molecular diagnosis: Implications for ophthalmology. Progress in retinal and eye research. 2016;50:25-33.

Hornick NI, Doron B, Abdelhamed S, Huan J, Harrington CA,Shen R, Cambronne XA,Chakkaramakkil Verghese S, Kurre P. AML suppresses hematopoiesis by releasing exosomes that contain microRNAs targeting c-MYB.Science signaling. 2016;9(444):ra88.

Tsikitis VL, Potter A, Mori M, Buckmeier JA, Preece CR,Harrington CA, Bartley AN, Bhattacharyya A, Hamilton SR, Lance P, Thompson PA.MicroRNA signatures of colonic adenomas according to histology. Cancer Prev Res(Phila). 2016 Sep 22. pii: anprevres.0086.2016.

Lusardi TA, Phillips JI, Wiedrick JT, Harrington CA, Lind B,Lapidus JA, Quinn JF, Saugstad JA. MicroRNAs in Human Cerebrospinal Fluid as Biomarkers for Alzheimer's Disease. J Alzheimers Dis. 2016 Nov 3. [Epub aheadof print]
 

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