OHSU

Division of Bioinformatics and Computational Biology

Active areas of research & study include: Systems Biology and Statistical Genetics, Text Mining and Information Retrieval, Imaging and Computational Neuroscience.

A Division of Bioinformatics and Computational Biology has been established in the Department of Medical Informatics and Clinical Epidemiology (DMICE). The new division provides a unified and more visible academic home for an array of disparate educational programs, inter-linked activities and collaborative research efforts in bioinformatics and computational biology across OHSU and beyond. The interdisciplinary coursework includes computer science, informatics, statistics and biology; it draws on inter-institutional faculty expertise at Portland State University as well as OHSU, and is synergistic with work in the Department of Public Health & Preventive Medicine, the Knight Cancer Institute, the Oregon Clinical and Translational Research Institute and the Kaiser Center for Health Research.

Computational biology is an interdisciplinary field that applies the techniques of computer science, applied mathematics and statistics to address biological problems. The main focus lies in the development of computational and statistical data analysis methods and in developing mathematical modeling and computational simulation techniques. By these means it addresses scientific research topics with their theoretical and experimental questions without a laboratory.


BCB Faculty and Instructors (Primary)

Dr. Shannon McWeeney Functional Genomics, Statistical Genetics, Systems Biology
Dr. Eilis Boudreau Computational Neuroscience, Imaging
Dr. Aaron Cohen Text Mining, Information Retrieval, NLP
Dr. Holly Jimison Computational Neuroscience & Cognition
Dr. Jayashree Kalpathy-Cramer Information Retrieval, Imaging
Dr. Judith Logan Databases
Dr. Kemal Sönmez Functional Genomics, Systems Biology
Dr. Beth Wilmot Functional Genomics, Statistical Genetics


Joint BCB Faculty

Dr. Tomi Mori Functional Genomics
Dr. Misha Pavel
Dr. Brian Roark Natural Language Processing


Adjunct Faculty

Dr. David Maier Databases, Computational Biology


Affiliate Faculty

Dr. Brian Hazlehurst NLP, Information Retrieval

@OHSUBCB Division Head Dr. Shannon McWeeney participated in the @OceansofData #BigData expert panel which also... http://t.co/AvwKZFfLbF

Still a few open slots for the Jackson Laboratory Short Course on Genetics of Addiction. Aug 28, 2014 - Sep 2,... http://t.co/X9Af0ccZUh

Global Health & Innovation Conference Presented by Unite For Sight, 12th Annual Conference Yale University, New... http://t.co/TufEv8JrNo

For OHSU clinician scientists! Write Winning Grants – Friday, November 14, 2014, 8:00 am- 5:00 pm The Oregon... http://t.co/MxpFA5Wxrh

Live workshop on September 2, 2014, 8:30 am-2:30 pm (EST) Neuroimmune Mechanisms Contributing to Addiction... http://t.co/zAVuZaTxIk

IHTSDO would like your advice on ways to help you and your colleagues exploit the power of SNOMED CT to support... http://t.co/Chm6C06c0N

Parents Help Write Draft Guidance on Duchenne Muscular Dystrophy for FDA Evaluation http://t.co/G2tBVzpu0N

Mayo Clinic Senior Faculty Position in Data Science Mayo Clinic is seeking an innovative, motivated faculty... http://t.co/djvAFvc2lq

HHMI Advanced Imaging Center Janelia Visitor Program Under this program, visiting scientists will spend 1-2 weeks... http://t.co/vZ1tOQz99D

A humorous but important blog on the cultural challenges faced by collaborative scientists (such as those in... http://t.co/qR61AYzhs5

Congrats to OHSU Biomedical Informatics Faculty Joan Ash who is one of @thomsonreuters Highly Cited Researchers... http://t.co/IaGjXZ7pSQ

CI4CC Rapid Innovation Challenges & Initiative: ‘Mobile Technologies in Clinical... http://t.co/Ycl9L4yob9

Webinar 7/18 11:00 am ET "The MURDOCK Study Community Registry and Biorepository"... http://t.co/CJLkCjs3vz

Congrats to OHSU Biomedical Informatics Faculty Joanne Valerius who received the AHIMA Triumph Educator Award!... http://t.co/gRzXQO0FMu

New positions with the Mayo Clinic postdoctoral training grant in Cancer Genetics/Genomic Epidemiology http://t.co/QAiGcGptoV

CALL FOR PAPERS, POSTERS AND DEMONSTRATIONS: Workshop on Visual Analytics in Healthcare (In conjunction with AMIA... http://t.co/hazLWLBKTd

Webinar: Darrell Hurt, Ph.D., "The NIH 3D Print Exchange” on Wednesday, July 9 11:00 AM ET wiki page at... http://t.co/BzE3NXA8Co

Seminar: "Building tissues to understand how tissues build themselves" Zev Gartner, PhD Wednesday, July 16, 2014 4:00 p.m. Vollum M1441

The 25th International Conference on Genome Informatics (GIW / ISCB-Asia 2014) December 15-17, 2014, Tokyo, Japan... http://t.co/6DC3I58U52

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