OHSU

Division of Bioinformatics and Computational Biology

Active areas of research & study include: Systems Biology and Statistical Genetics, Text Mining and Information Retrieval, Imaging and Computational Neuroscience.

A Division of Bioinformatics and Computational Biology has been established in the Department of Medical Informatics and Clinical Epidemiology (DMICE). The new division provides a unified and more visible academic home for an array of disparate educational programs, inter-linked activities and collaborative research efforts in bioinformatics and computational biology across OHSU and beyond. The interdisciplinary coursework includes computer science, informatics, statistics and biology; it draws on inter-institutional faculty expertise at Portland State University as well as OHSU, and is synergistic with work in the Department of Public Health & Preventive Medicine, the Knight Cancer Institute, the Oregon Clinical and Translational Research Institute and the Kaiser Center for Health Research.

Computational biology is an interdisciplinary field that applies the techniques of computer science, applied mathematics and statistics to address biological problems. The main focus lies in the development of computational and statistical data analysis methods and in developing mathematical modeling and computational simulation techniques. By these means it addresses scientific research topics with their theoretical and experimental questions without a laboratory.


BCB Faculty and Instructors (Primary)

Dr. Shannon McWeeney Functional Genomics, Statistical Genetics, Systems Biology
Dr. Eilis Boudreau Computational Neuroscience, Imaging
Dr. Aaron Cohen Text Mining, Information Retrieval, NLP
Dr. Holly Jimison Computational Neuroscience & Cognition
Dr. Jayashree Kalpathy-Cramer Information Retrieval, Imaging
Dr. Judith Logan Databases
Dr. Kemal Sönmez Functional Genomics, Systems Biology
Dr. Beth Wilmot Functional Genomics, Statistical Genetics


Joint BCB Faculty

Dr. Tomi Mori Functional Genomics
Dr. Misha Pavel
Dr. Brian Roark Natural Language Processing


Adjunct Faculty

Dr. David Maier Databases, Computational Biology


Affiliate Faculty

Dr. Brian Hazlehurst NLP, Information Retrieval

A humorous but important blog on the cultural challenges faced by collaborative scientists (such as those in... http://t.co/qR61AYzhs5

Congrats to OHSU Biomedical Informatics Faculty Joan Ash who is one of @thomsonreuters Highly Cited Researchers... http://t.co/IaGjXZ7pSQ

CI4CC Rapid Innovation Challenges & Initiative: ‘Mobile Technologies in Clinical... http://t.co/Ycl9L4yob9

Webinar 7/18 11:00 am ET "The MURDOCK Study Community Registry and Biorepository"... http://t.co/CJLkCjs3vz

Congrats to OHSU Biomedical Informatics Faculty Joanne Valerius who received the AHIMA Triumph Educator Award!... http://t.co/gRzXQO0FMu

New positions with the Mayo Clinic postdoctoral training grant in Cancer Genetics/Genomic Epidemiology http://t.co/QAiGcGptoV

CALL FOR PAPERS, POSTERS AND DEMONSTRATIONS: Workshop on Visual Analytics in Healthcare (In conjunction with AMIA... http://t.co/hazLWLBKTd

Webinar: Darrell Hurt, Ph.D., "The NIH 3D Print Exchange” on Wednesday, July 9 11:00 AM ET wiki page at... http://t.co/BzE3NXA8Co

Seminar: "Building tissues to understand how tissues build themselves" Zev Gartner, PhD Wednesday, July 16, 2014 4:00 p.m. Vollum M1441

The 25th International Conference on Genome Informatics (GIW / ISCB-Asia 2014) December 15-17, 2014, Tokyo, Japan... http://t.co/6DC3I58U52

Congrats to Dr. Gouaux on the 3-D model of NMDA receptor published in Nature!... http://t.co/YTKL3tX6cF

Postdoctoral Fellowship in Data Curation and Visualization at the UCLA Library and Medical Informatics Group.... http://t.co/Vs0MjB0QPn

The New England Journal of Medicine Review on Diagnostic Clinical Genome and Exome Sequencing... http://t.co/MGMRsoR6qH

First Call for Participation: Clinical TempEval 2015 Clinical TempEval brings the temporal information extraction... http://t.co/pC0jRSCALG

Congrats to NLM Fellow Patricia Yao who won the best Open Mic talk presentation today at the 2014 National... http://t.co/TEi3jDsbRl

JAX Genomic Medicine Grand Opening Scientific Symposium... http://t.co/x31oivtXB5

Seminar: 6/23 at 10am Vollum M1441 "The ICGC/TCGA DREAM Somatic Mutation Calling Challenge" Speakers: Paul... http://t.co/Mb2hWcORHo

Sneak peak trailer of the new Collaborative Life Sciences Building (a joint venture between PSU, OHSU, and Oregon... http://t.co/2pafOZjUx9

Today 6/5: “Expanding the Clinical Phenotype Space Using Model Systems Data” @OHSUBCB Faculty Melissa Haendel,... http://t.co/omHNDQHUOl

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