Bio-informatics

Data Processing & Database Development

We offer free sequence assembly and primer design.

We can also help with database development, data processing & automation programming (aka "Data Munging"). On-going projects can be either collaborative or fee-for-service.

If you find yourself cutting and pasting lots of data, or searching through long blast or other reports by hand, I can write scripts to automate the process and generate a spreadsheet or set of database records with the extracted bits.

Open Source and Free Tools

DNA Sequencing Data: Viewing & Editing

Fragment Analysis: Viewing & Editing

Alignment & Assembly

We use the University of Washington (free for academic use) programs: phred, phrap, consed (shown above) and polyphred (SNP calls).