Recent Publications

Clinical Informatics | Bioinformatics | Clinical Epidemiology | Health Information Management

*Archived Publications at bottom of page

Clinical Informatics

Second opinion in breast pathology: policy, practice and perception

Geller BM, Nelson HD, Carney PA, Weaver DL, Onega T, Allison KH, Frederick PD, Tosteson AN, Elmore JG. J Clin Pathol. 2014 Jul 22. pii: jclinpath-2014-202290. doi: 10.1136/jclinpath-2014-202290
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Corepressor Rcor1 is essential for murine erythropoiesis

Yao H, Goldman DC, Nechiporuk T, Kawane S, McWeeney SK, Tyner JW, Fan G, Kerenyi MA, Orkin SH, Fleming WH, Mandel G. Blood. 2014 May 15;123(20):3175-84. doi: 10.1182/blood-2013-11-538678
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Depression Drug Treatment Outcomes in Pregnancy and the Postpartum Period: A Systematic Review and Meta-analysis

McDonagh MS, Matthews A, Phillipi C, Romm J, Peterson K, Thakurta S, Guise JM. Obstet Gynecol. 2014 Jul 7
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Impact of an electronic health record operating room management system in ophthalmology on documentation time, surgical volume, and staffing

Sanders DS, et al. JAMA Ophthalmol. 132(5):586-92. doi: 10.1001/jamaophthalmol.2013.8196. 2014 MAY
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Impact of simulation and team training on postpartum hemorrhage management in non-academic centers.

Marshall NE, Vanderhoeven J, Eden KB, Segel SY, Guise JM. J Matern Fetal Neonatal Med. 2014 M:1-5. [Epub ahead of print]
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Digitized Whole Slides for Breast Pathology Interpretation: Current Practices and Perceptions.

Onega T, Weaver D, et al. J Digit Imaging. 2014 Mar 29. [Epub ahead of print]
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Time-motion analysis of clinical nursing documentation during implementation of an electronic operating room management system for ophthalmic surgery

Yackel TR,Chiang MF, et al. AMIA Annual Symposium Proceedings. 2013 Nov 16:1195-204. eCollection 2013.
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Electronic health record systems in ophthalmology: impact on clinical documentation

Chiang, MF, et al. Ophthalmology. 2013 Sep;120(9):1745-55. doi: 10.1016/j.ophtha.2013.02.017.
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Evaluation of electronic health record implementation in ophthalmology at an academic medical center (an American Ophthalmological Society thesis)

Chiang MF, et al. Trans Am Ophthalmol Soc. 2013 SEPT.
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Caveats for the use of operational electronic health record data in comparative effectiveness research

Hersh WR, Weiner MG, et al. Med Care. 51(8 Suppl 3):S30-7. 2013 AUG
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Bioinformatics & Computational Biology

Survey of anesthesiologists practicing in American neurointensive care units as neurointensivists

James ML, Dority J, Gray MC, Bellows ST, McDonagh DL, Brambrink AM. J Neurosurg Anesthesiol. 2014 Jan;26(1):11-6. doi: 10.1097/ANA.0b013e31829e705e.
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Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, Robinson-Rechavi M, Sereno PC, Mungall CJ. J Biomed Semantics. 2014 May 19;5:21. doi: 10.1186/2041-1480-5-21. eCollection 2014.
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Meaningful Use: How Did We Do, Where Are We Now, Where Do We Go from Here?

Lim MC, Chiang MF, Boland MV, McCannel CA, Wedemeyer L, Epley KD, Silverstone DE, Saini A, Lum F.
Ophthalmology. 2014 Jul 24. pii: S0161-6420(14)00582-X. doi: 10.1016/j.ophtha.2014.06.048
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Impact of an electronic health record operating room management system in ophthalmology on documentation time, surgical volume, and staffing

Sanders DS, Read-Brown S, Tu DC, Lambert WE, Choi D, Almario BM, Yackel TR, Brown AS, Chiang MF., JAMA Ophthalmol. 2014 May
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Low back pain in primary care.

Deyo RA, Jarvik JG, Chou R. BMJ. 2014 Jul 16;349:g4266. doi: 10.1136/bmj.g4266
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Focus Article Report of the NIH Task Force on Research Standards for Chronic Low Back Pain.

Deyo RA, Dworkin SF, Amtmann D, Andersson G, Borenstein D, Carragee E, Carrino J, Chou R, Cook K, DeLitto A, Goertz C, Khalsa P, Loeser J, Mackey S, Panagis J, Rainville J, Tosteson T, Turk D, Von Korff M, Weiner DK. Clin J Pain. 2014 Aug;
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A framework for evaluating diagnostic discordance in pathology discovered during research studies.

Feng S, Weaver DL, Carney PA, M Reisch L, M Geller B, Goodwin A, Rendi MH, Onega T, Allison KH, Tosteson AN, Nelson HD, Longton G, Pepe M, Elmore JG.
Arch Pathol Lab Med. 2014 Jul;
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Report of the NIH Task Force on Research Standards for Chronic Low Back Pain.

Deyo RA, Dworkin SF, Amtmann D, Andersson G, Borenstein D, Carragee E, Carrino J, Chou R, Cook K, DeLitto A, Goertz C, Khalsa P, Loeser J, Mackey S, Panagis J, Rainville J, Tosteson T, Turk D, Von Korff M, Weiner DK.
Spine J. 2014 Jun 17.
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Observational evidence and strength of evidence domains: case examples.

O'Neil M, Berkman N, Hartling L, Chang S, Anderson J, Motu'apuaka M, Guise JM, McDonagh MS.
Syst Rev. 2014 Apr 23;
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Corepressor Rcor1 is essential for murine erythropoiesis.

Yao H, Goldman DC, et al. Blood. 2014 May 15;123(20):3175-84. doi: 10.1182/blood-2013-11-538678. Epub 2014 Mar 20.
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Systematic review of the benefits and risks of metformin in treating obesity in children aged 18 years and younger.

McDonagh MS, Selph S, Ozpinar A, Foley C.
JAMA Pediatr. 2014 Feb;
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Effectiveness and harms of recombinant human bone morphogenetic protein-2 in spine fusion: a systematic review and meta-analysis.

Fu R, Selph S, McDonagh M, Peterson K, Tiwari A, Chou R, Helfand M.
Ann Intern Med. 2013 Jun 18;
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Genetic factors involved in risk for methamphetamine intake and sensitization.

Belknap JK, McWeeney S, Reed C, Burkhart-Kasch S, McKinnon CS, Li N, Baba H, Scibelli AC, Hitzemann R, Phillips TJ.
Mamm Genome. 2013 Dec; Epub 2013 Nov 13.
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Genetic susceptibility to chronic otitis media with effusion: candidate gene single nucleotide polymorphisms.

MacArthur CJ, Wilmot B, Wang L, Schuller M, Lighthall J, Trune D.
Laryngoscope. 2014 May;124(5):1229-35. doi: 10.1002/lary.24349. Epub 2013 Oct 2.
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Multi-omic network signatures of disease

Gibbs DL, McWeeney SK, et al. Frontiers in Genetics. 2014 Jan 7;4:309. eCollection 2014.
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Clinical Epidemiology

Influenza Vaccination of Pregnant Women: Attitudes and Behaviors of Oregon Physician Prenatal Care Providers

Arao RF, Rosenberg KD, McWeeney S, Hedberg K. Matern Child Health J. 2014 Jul 18
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A proposed approach may help systematic reviews retain needed expertise while minimizing bias from nonfinancial conflicts of interest.

Viswanathan M, Carey TS, Belinson SE, Berliner E, Chang SM, Graham E, Guise JM, Ip S, Maglione MA, McCrory DC, McPheeters M, Newberry SJ, Sista P, White CM. J Clin Epidemiol. 2014 Jul 9. pii: S0895-4356(14)00211-X. doi: 10.1016/j.jclinepi.2014.02.023.
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Methadone overdose and cardiac arrhythmia potential: findings from a review of the evidence for an American Pain Society and College on Problems of Drug Dependence clinical practice guideline

Chou R, Weimer MB, Dana T. J Pain. 2014 Apr;15(4):338-65. doi: 10.1016/j.jpain.2014.01.495.
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Research gaps on methadone harms and comparative harms

Weimer MB, Chou R. J Pain. 2014 Apr;15(4):366-76. doi: 10.1016/j.jpain.2014.01.496.
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Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences

Ambert KH, Cohen AM, Burns GA, Boudreau E, Sonmez K. Frontiers in Neuroinformatics.2013 Dec 25;7:38. eCollection 2013.
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Rule-based deduplication of article records from bibliographic databases

Jiang Y, Cohen AM, et al. Database (Oxford). Published online Jan 16;2014. Print 2014.
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Systematic Review of the Benefits and Risks of Metformin in Treating Obesity in Children Aged 18 Years and Younger

McDonagh MS, Selph S, Ozpinar A, Foley C. JAMA Pediatr. 2013 Dec 16. doi: 10.1001/jamapediatrics.2013.4200. [Epub ahead of print]
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Rates and indications for surgical breast biopsies in a community-based health system

Soot L, Weerasinghe R, Wang L, Nelson HD. Am J Surg. 2013 Nov 10. pii: S0002-9610(13)00649-1. doi: 10.1016/j.amjsurg.2013.07.046.
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Association between knowledge of HIV-positive status or use of antiretroviral therapy and high-risk transmission behaviors: Systematic review

Zakher B Blazina I, Chou R. AIDS Care. 2013 Sep 5.
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US Food and Drug Administration documents can provide unpublished evidence relevant to systematic reviews

McDonagh MS, Peterson K, Balshem H, Helfand M.J Clin Epidemiol. 2013 Oct;66. Epub 2013 Jul 12.
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Preventing dental caries in children <5 years: systematic review updating USPSTF recommendation.

Chou R, Cantor A, Zakher B, Mitchell JP, Pappas M.Pediatrics. 2013 Aug;132(2):332-50. doi: 10.1542/peds.2013-1469. Epub 2013 Jul 15. Review.
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Health Information Management

Taking the doctoral challenge. Educators push HIM professionals to add PhD to credentials

Brodnik MS, Valerius JD, Watzlaf VJ. Journal of AHIMA. 2013 Aug; 84(8):24-7.
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Archived publications

Use of simulation to assess electronic health record safety in the intensive care unit: a pilot study.
Christopher A March, David Steiger, Gretchen Scholl, Vishnu Mohan, William R Hersh, Jeffrey A Gold. BMJ Open 2013; 3:e002549. doi:10.1136/bmjopen-2013-002549

Barriers to retrieving patient information from electronic health record data: failure analysis from the TREC Medical Records Track.
Edinger T, Cohen AM, Bedrick S, Ambert K, Hersh W. AMIA Annu Symp Proc. 2012;2012:180-8. Epub 2012 Nov 3. 

Text-mining and neuroscience
Ambert KH, Cohen AM. Int Rev Neurobiol. 2012;103:109-32. doi: 10.1016/B978-0-12-388408-4.00006-X.  

Studying the potential impact of automated document classification on scheduling a systematic review update.
Cohen AM, Ambert K, McDonagh M.BMC Med Inform Decis Mak. 2012 Apr 19;12:33. doi: 10.1186/1472-6947-12-33.