OHSU

Publications

Recent Publications

Clinical Informatics | Bioinformatics | Clinical Epidemiology | Health Information Management

Clinical Informatics

Racial and ethnic differences in clinical outcome trajectories for care managed patients.

Quiñones AR1, Ramsey K, Newsom JT, Dorr DA. Med Care. 2014 Nov;
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BCR-ABL1 promotes leukemia by converting p27 into a cytoplasmic oncoprotein.

Agarwal A, Mackenzie RJ, Besson A, Jeng S, Carey A, LaTocha DH, Fleischman AG, Duquesnes N, Eide CA, Vasudevan KB, Loriaux MM, Firpo E, Cortes JE, McWeeney S, O'Hare T, Roberts JM, Druker BJ, Deininger MW. Blood. 2014 Oct 7
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Participation in EHR based simulation improves recognition of patient safety issues.

Stephenson LS, Gorsuch A, Hersh WR, Mohan V, Gold JA1. BMC Med Educ. 2014 Oct 21
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Meaningful use: how did we do, where are we now, where do we go from here?

Lim MC, Chiang MF, Boland MV, McCannel CA, Wedemeyer L, Epley KD, Silverstone DE, Saini A, Lum F.Ophthalmology. 2014 Sep;
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Clinical interpretation of CNVs with cross-species phenotype data

Kohler S, Schoeneberg U, Czeschik JC, Doelken SC, Hehir-Kwa JY, Ibn-Salem J, Mungall CJ, Smedley D, Haendel MA, Robinson PN. J Med Genet. 2014 Oct 3. pii: jmedgenet-2014-102633
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Focus article: report of the NIH task force on research standards for chronic low back pain

Deyo RA, Dworkin SF, Amtmann D, Andersson G, Borenstein D, Carragee E, Carrino J, Chou R, Cook K, DeLitto A, Goertz C, Khalsa P, Loeser J, Mackey S, Panagis J, Rainville J, Tosteson T, Turk D, Von Korff M, Weiner DK. Eur Spine J. 2014 Oct;23(10):2028-45. doi: 10.1007/s00586-014-3540-3.
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Implementing a Paradigm Shift: Incorporating Pain Management Competencies into Pre-Licensure Curricula

Arwood E, Rowe JM, Singh NS, Carr DB, Herr KA, Chou R. Pain Med. 2014 Sep 22. doi: 10.1111/pme.12563.
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Response to katz and krantz letter to the editor

Chou R. J Pain. 2014 Sep;15(9):977. doi: 10.1016/j.jpain.2014.06.006.
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Functional and genomic context in pathway analysis of GWAS data

Mooney MA, Nigg JT, McWeeney SK, Wilmot B. Trends Genet. 2014 Aug 22. pii: S0168-9525(14)00116-4. doi: 10.1016/j.tig.2014.07.004.
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Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

Dahdul WM, Cui H, Mabee PM, Mungall CJ, Osumi-Sutherland D, Walls RL, Haendel MA. J Biomed Semantics. 2014 Aug 11;5:34. doi: 10.1186/2041-1480-5-34
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Development of an electronic breast pathology database in a community health system.

Nelson HD, Weerasinghe R, Martel M, Bifulco C, Assur T, Elmore JG, Weaver DL. J Pathol Inform. 2014 Jul 30;5:26. doi: 10.4103/2153-3539.137730. eCollection 2014.
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Second opinion in breast pathology: policy, practice and perception

Geller BM, Nelson HD, Carney PA, Weaver DL, Onega T, Allison KH, Frederick PD, Tosteson AN, Elmore JG. J Clin Pathol. 2014 Jul 22. pii: jclinpath-2014-202290. doi: 10.1136/jclinpath-2014-202290
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Depression Drug Treatment Outcomes in Pregnancy and the Postpartum Period: A Systematic Review and Meta-analysis

McDonagh MS, Matthews A, Phillipi C, Romm J, Peterson K, Thakurta S, Guise JM. Obstet Gynecol. 2014 Jul 7
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Meaningful Use: How Did We Do, Where Are We Now, Where Do We Go from Here?

Lim MC, Chiang MF, Boland MV, McCannel CA, Wedemeyer L, Epley KD, Silverstone DE, Saini A, Lum F.
Ophthalmology. 2014 Jul 24. pii: S0161-6420(14)00582-X. doi: 10.1016/j.ophtha.2014.06.048
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Low back pain in primary care.

Deyo RA, Jarvik JG, Chou R. BMJ. 2014 Jul 16;349:g4266. doi: 10.1136/bmj.g4266
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Bioinformatics & Computational Biology

Cytomegalovirus miRNAs target secretory pathway genes to facilitate formation of the virion assembly compartment and reduce cytokine secretion.

Hook LM, Grey F, Grabski R, Tirabassi R, Doyle T, Hancock M, Landais I, Jeng S, McWeeney S, Britt W, Nelson JA., Cell Host Microbe, 2014 Mar 12
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Challenges in secondary analysis of high throughput screening data

Blucher AS, McWeeney SK. Pac Symp Biocomput. 2014:114-24.
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The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology

Thacker RW, Daz MC, Kerner A, Vignes-Lebbe R, Segerdell E, Haendel MA, Mungall CJ. J Biomed Semantics. 2014 Sep 8;5(1):39. doi: 10.1186/2041-1480-5-39
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Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome

Zemojtel T, Khler S, Mackenroth L, Jger M, Hecht J, Krawitz P, Graul-Neumann L, Doelken S, Ehmke N, Spielmann M, Oien NC, Schweiger MR, Krger U, Frommer G, Fischer B, Kornak U, Flttmann R, Ardeshirdavani A, Moreau Y, Lewis SE, Haendel M, Smedley D, Horn D, Mundlos S, Robinson PN. Sci Transl Med. 2014 Sep 3;6(252):252ra123
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Functional and genomic context in pathway analysis of GWAS data

Mooney MA, Nigg JT, McWeeney SK, Wilmot B. Trends Genet. 2014 Aug 22. pii: S0168-9525(14)00116-4. doi: 10.1016/j.tig.2014.07.004.
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Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

Dahdul WM, Cui H, Mabee PM, Mungall CJ, Osumi-Sutherland D, Walls RL, Haendel MA. J Biomed Semantics. 2014 Aug 11;5:34. doi: 10.1186/2041-1480-5-34
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A framework for evaluating diagnostic discordance in pathology discovered during research studies.

Feng S, Weaver DL, Carney PA, M Reisch L, M Geller B, Goodwin A, Rendi MH, Onega T, Allison KH, Tosteson AN, Nelson HD, Longton G, Pepe M, Elmore JG.
Arch Pathol Lab Med. 2014 Jul;
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Influenza Vaccination of Pregnant Women: Attitudes and Behaviors of Oregon Physician Prenatal Care Providers

Arao RF, Rosenberg KD, McWeeney S, Hedberg K. Matern Child Health J. 2014 Jul 18
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A proposed approach may help systematic reviews retain needed expertise while minimizing bias from nonfinancial conflicts of interest.

Viswanathan M, Carey TS, Belinson SE, Berliner E, Chang SM, Graham E, Guise JM, Ip S, Maglione MA, McCrory DC, McPheeters M, Newberry SJ, Sista P, White CM. J Clin Epidemiol. 2014 Jul 9. pii: S0895-4356(14)00211-X. doi: 10.1016/j.jclinepi.2014.02.023.
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Clinical Epidemiology

Fully Automated Assessment of the Severity of Parkinson's Disease from Speech.

Bayestehtashk A, Asgari M, Shafran I, McNames J., Comput Speech Lang. 2015 Jan
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Kreuzschmerzen in der Primärversorgung

Deyo RA, Jarvik JG, Chou R. Praxis (Bern 1994). 2014 Nov 1
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Focus Article Report of the NIH Task Force on Research Standards for Chronic Low Back Pain.

Deyo RA, Dworkin SF, Amtmann D, Andersson G, Borenstein D, Carragee E, Carrino J, Chou R, Cook K, DeLitto A, Goertz C, Khalsa P, Loeser J, Mackey S, Panagis J, Rainville J, Tosteson T, Turk D, Von Korff M, Weiner DK. Clin J Pain. 2014 Aug;
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Influenza Vaccination of Pregnant Women: Attitudes and Behaviors of Oregon Physician Prenatal Care Providers

Arao RF, Rosenberg KD, McWeeney S, Hedberg K. Matern Child Health J. 2014 Jul 18
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A proposed approach may help systematic reviews retain needed expertise while minimizing bias from nonfinancial conflicts of interest.

Viswanathan M, Carey TS, Belinson SE, Berliner E, Chang SM, Graham E, Guise JM, Ip S, Maglione MA, McCrory DC, McPheeters M, Newberry SJ, Sista P, White CM. J Clin Epidemiol. 2014 Jul 9. pii: S0895-4356(14)00211-X. doi: 10.1016/j.jclinepi.2014.02.023.
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Health Information Management