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Class Schedule - Fall 2014

 

EBS 505C /EBS 605C
Reading Group: Transgenerational Epigenetics
Credits: 2
Times: Monday 12:30 -  2:10 PM
Room: CHH 3171 1A
Course Description: Presentation and discussion of journal articles from the recent literature in molecular biology, genetics and biochemistry. This course will cover the following topics:
   1. Bacteria and parasites (Malaria) 
   2. NcRNA and the methylation landscape: mechanisms of epigenetic inheritance
   3. Epigenetics in Public Health: Prenatal exposures. Can fear be inherited

EBS 505D /EBS 605D
Reading Group: Environmental Systems & Human Health
Credits: 2
Times: Wednesday 12:30 PM – 2:10 PM
Room: CHH 3171 1A
Instructor: Richard Johnson and Paul Tratnyek
Course Description: We will examine classic scientific papers that have shaped our understanding of the relationship between environmental systems and human health. Most Americans believe there are strong links between the quality of our environment and human health.  Over the last 40+ years, scientific research has shaped that belief and continues to do so in important areas including climate change and chemical exposure. As environmental professionals, it is important for us to understand the strengths and weaknesses of the scientific underpinnings of those links, and in this reading group we will carefully examine a number of important scientific papers.

EBS 507A/ EBS 607A
EBS Division Seminar
Credits: 0
Times: Friday 10:45AM-11:55AM
Room: Mac Hall 1162
Instructor: Peter Zuber

EBS 510 /EBS 610
Aquatic Chemistry
Credits: 4
Times: TTh 9:30 AM – 11:10 AM
Room: CHH 3171 1A
Insturctor: Joseph Needoba and Paul Tratnyek
Course Description: This course covers fundamental concepts of aquatic chemistry including: tableau method for solving equilibrium problems; acids and bases; pH; activity corrections; numerical calculations; titration concepts as applied to natural systems; buffer intensity; dissolved CO2 chemistry; acidity and alkalinity in open CO2 systems; minerals and their role in controlling natural water chemistry; solubility characteristics of oxide and hydroxides; introduction to redox chemistry in natural systems; pe-pH diagrams.

EBS 512 /EBS 612
Biochemistry I: Enzyme Structure & Genetics
Credits: 4
Times: MW 9:00AM -10:40AM
Room: Mac Hall 2136
Instructor: Pierre Moënne-Loccoz
Course Description: Primary, secondary and tertiary structure of proteins; enzyme mechanisms; enzyme kinetics.

EBS 515/615
Environmental & Biomolecular History of the Earth
Credits: 4
Times: TTh 12:30 PM – 2:10 PM
Room: CHH 3171 1A
Instructor: Brad Tebo, Margo Haygood & Holly Simon
Course Description: This course explores the origin and evolution of the environment, including physical, chemical and biological contributions and interactions. Topics will be taught along a timeline from the origin of the earth to present day, and will include the biological and chemical evolution of Earth; an introduction to metabolism and microbial energetics; effect of the environment on microbial growth, activity and processes; biogeochemical cycling of elements: microbial interactions (including evolution of higher organisms.)

CONJ 650 (Everyone registers at 600 level)
Practice and Ethics of Science
Credits:  1
Times:  Tuesdays, 4:00-6:00 p.m.
Room:   Vollum Auditorium, M1441 (Main campus in Portland; teleconferenced to the west campus)
Instructor:   Multiple
Course description:  Required for all incoming graduate students (in EBS, required of all students who matriculated in Fall 2008 or later). This course is designed to provide an introduction to basic principles of scientific conduct and practice for graduate students.

Class Schedule - Summer 2014

No classes offered during summer.

Class Schedule - Spring 2014


EBS 505C/EBS 605C
Reading Group: Metals in Cancer Biology
Credits: 2
Times:  Tu 1:30 PM – 3:10 PM
Building and Room:  Mac Hall 2201 (4/29 meet in BTE 257)
Instructor:   Moënne-Loccoz, Blackburn
Course Description: This reading group is intended to be student-driven, with the instructors providing the general theme of the class along with a few potential focused areas to be covered during the quarter. Exact details on the functioning of the class will vary depending on the number of registered students, but all students will be required to select and present research papers, participate in discussions for all presentations, and contribute to a final review and discussion of the research areas covered during the quarter.

This year, the areas of interest within the general theme of "Metals in Cancer Research" are:
-Metal homeostasis and tumor proliferation
-Cancer risks from exposure to toxic metals
-Metal related cancer therapy

EBS 505D /EBS 605D
Reading Group: Chemical Transport Processes in Environmental Health
Credits: 2
Times: W 1:00 PM – 2:40 PM
Building and Room: MRB 634
Instructor: Johnson
Course Description: Presentation and discussion of journal articles from the recent literature in environmental health pertaining to the toxicokinetics of TTrichloroethene (TCE).

Human health risk is a central driver for most environmental restoration activities involving anthropogenic chemicals.  Trichloroethene (TCE) represents an excellent example of this in that,  due to its apparent risks to humans, billions of dollars a year are spent to remove it from the environment. Much of our understanding of TCE risk comes from toxicological data.  In this reading group we will examine the toxicological literature relating to TCE from five different perspectives: exposure, metabolism, toxicology, pharmacokinetics and risk.  We will use physiologically based pharmacokinetic (PBPK) modelling as an organizing tool through which to view these perspectives.

EBS 507A/ EBS 607A
EBS Division Seminar
Credits: 0
Times: Friday, 10:45-11:55
Instructors: Whittaker
Room: Mac Hall 1162 or as announced
Course Description: Weekly seminars by invited guests. Public visitors are welcome.

EBS 514 EBS 614
Biochemistry III: Metabolism and Bioenergetics
Credits: 4
Times:  MW 9:00AM -10:40AM
Building and Room:  SJH 4248 (3/31 meet in BRB 403)
Instructor:   Whittaker
Course Description: Introduction to the structure and function of metabolic systems. Course is divided into five parts: 1) Introduction to chemical logic and bioenergetics. 2) Membrane processes: transport and signaling; 3) Core energy metabolism: glycolysis, citric acid cycle, oxidative phosphorylation and photosynthesis. 4) Core biosynthetic pathways: pentose phosphate pathway, glycogen storage, amino acids, nucleotides and lipids. 5) Integration of metabolism and regulation.

EBS 517/EBS 617
Environmental Systems and Human Health
Credits: 4
Times:  MTh 1:00 PM -2:40 PM
Building and Room: BICC 124 (6/19 meet in MRB 634)
Instructor: Simon & Needoba
Course Description: The course addresses perturbations of Earth’s biogeochemical cycles by human activities, and the impacts of resulting environmental hazards on human health and natural ecosystems. Lecture materials provide assessment of molecular to global scale processes in covering the tangible relationships between environmental degradation and human health. Student assignments confront current problems related to nitrogen pollution, climate change, and disease pressures.

EBS 566/666
Estuary & Ocean Systems II
Credits: 4
Times:  TTh 3:15 PM – 5:00 PM
Building and Room:  MacHall 3198 (4/8 meet in BTE 257; 4/3, 5/1 & 6/5 in MacHall 1162 )
Instructor: Peterson & Haygood
Course Description: Second of two-course sequence. This fast-paced two-course sequence provides an advanced introduction to marine systems. The sequence covers multiple scales, from cells to ocean basins. It is structured in three discipline-centric segments (cross-scale circulation processes, marine biogeochemistry, and marine organisms). This course covers marine organisms and estuary-plume-scale circulation.

Estuary and Ocean Systems II (EOS-II) provides a comprehensive introduction to biological oceanography and marine biology, covering topics such as primary production, food webs, microbial diversity, harmful algal blooms, physical-biological coupling, bioluminescence, and fisheries. Working knowledge of these topics will be tested through class presentations, exams, and an assignment that incorporate the use of oceanographic data sets

Class Schedule - Winter 2014


EBS 505A/ EBS 605A
Reading Group: Metals in Environmental Health
Credits: 2
Times: Wednesday. 12-1:50
Instructor: Tratnyek, Paul
Room: MRB 634
Course Description: Presentation and discussion of journal articles from the recent literature in environmental and biomolecular systems pertaining to metals in environmental health.

EBS 507A/ EBS 607A
EBS Division Seminar
Credits: 0
Times: Friday, 10:45-11:55
Instructors: Simon, Holly; Tratnyek, Paul
Room: SJH 4248
Course Description: Weekly seminars by invited guests. Public visitors are welcome.

EBS 507B/ EBS 607B
Student Seminar & Presentation
Credits: 2
Times: Tuesday, 1:00-2:50
Instructor: Watanabe, Karen
Room: BICC 124
Course Description: The student presentation reading group provides a supportive, interdisciplinary scientific environment where students will improve their oral presentation skills through instruction and practice. Each week a platform and a poster presentation will be given by students, then a discussion of each presentation will follow, and anonymously written comments will be provided to each speaker.

EBS 513/ EBS 613
Biochem II: Introduction to Molecular Biology
Credits: 4
Times: MW, 9-10:50 AM
Instructor: Zuber,Peter
Room: SJH 4248
1/6 & 1/27 meet in BRB 403
Course Description: DNA replication, RNA synthesis and protein synthesis; genetic code; gene regulation.

EBS 516 / EBS 616
Metals in Environmental & Human Health (Name change. Formerly Environmental Bioinorganic Chem)
Credits: 4
Times: MTh, 1:30-3:20 PM
Instructors: Blackburn, Ninian; Haygood, Margo
Room: SJH 4248
1/23 meet in Mac Hall 3198
Course Description: This course covers bioinorganic chemistry in environmental systems. Topics will include oxidation-reduction cycles, metal speciation, receptors and uptake systems, micronutrient requirements and utilization, enzymology and distribution of enzymes in the environment.

EBS 565/ EBS 665
Estuary & Ocean Systems I
Credits: 4
Times: TTh, 9-10:50 AM
Instructors: Needoba, Joe; Peterson, Tawnya
Room: BICC 124 (1/14 meet in BRB 381)
Course Description: First of two-course sequence. This fast-paced two-course sequence provides an advanced introduction to marine systems. The sequence covers multiple scales, from cells to ocean basins. It is structured in three discipline-centric segments (cross-scale circulation processes, marine biogeochemistry, and marine organisms). Estuaries and Ocean Systems I covers marine biogeochemistry and climate-scale ocean circulation, while Estuaries and Ocean Systems II (offered Winter quarter) covers marine organisms and estuary-plume-scale circulation.

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CALENDAR

5/9 Summer Registration Begins
6/30 Summer Classes Begin
7/7 Last Day to Register W/O Late Fee
7/7 Last Day to Add/Audit or Drop Class without a "W"
7/11 Last Day to Withdraw with 100% Refund
7/25 Last Day to Withdraw with 50% Refund

9/1 Labor Day Holiday
9/19 Summer Term Ends

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503 346-3411
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503 494-7800 (phone)
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503 494-4629 (fax)


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Mackenzie Hall Room 1120
Marquam Hill Campus