List of publications

Danielle Williamson 3MT State Competition 2014


MD/PhD students are involved in a wide variety of research projects across the OHSU campuses. Below are selected recent journal articles. Student names are in bold.



Bobeck EN, Chen Q, Morgan MM, Ingram SL (2014) Contribution of Adenylyl Cyclase Modulation of Pre- and Postsynaptic GABA neurotransmission to morphine antinocicpetion and tolerance. Neuropsychopharmacology: doi: 10.1038/npp.2014.62

Braun TP, Szumowski M, Levasseur PR, Grossberg AJ, Zhu X, Agarwal A, Marks DL. Muscle atrophy in response to cytotoxic chemotherapy is dependent on intact glucocorticoid signaling in skeletal muscle. PLoS One. 2014 Sep 25;9(9):e106489. doi: 10.1371/journal.pone.0106489. eCollection 2014. PMID:  25254959    [PubMed - in process] 

Feuer SK1, Liu X, Donjacour A, Lin W, Simbulan RK, Giritharan G, Piane LD, Kolahi K, Ameri K, Maltepe E, Rinaudo PF. Use of a mouse in vitro fertilization model to understand the developmental origins of health and disease hypothesis. Endocrinology. 2014 May;155(5):1956-69. doi: 10.1210/en.2013-2081. Epub 2014 Mar 31.

Magill ST, del Prado G, Chiovaro J. Embolization of hemorrhaging rectus sheath hematoma. J Gen Intern Med. 2014 Feb;29(2):408-9. doi: 10.1007/s11606-013-2579-x. Epub 2013 Sep 4. PMCID:   PMC3912283

Nilsen A, Miley GP, Forquer IP, Mather MW, Katneni K, Li Y, Pou S, Pershing AM, Stickles AM, Ryan E, Kelly JX, Doggett JS, White KL, Hinrichs DJ, Winter RW, Charman SA, Zakharov LN, Bathurst I, Burrows JN, Vaidya AB, Riscoe MK. Discovery, synthesis, and optimization of antimalarial 4(1H)-quinolone-3-diarylethers. J Med Chem. 2014 May 8;57(9):3818-34. doi: 10.1021/jm500147k. Epub 2014 Apr 18. PMID:  24720377  [PubMed - indexed for MEDLINE] PMCID:  PMC4018401

Scott GD, Karns CM, Dow MW, Stevens C and Neville HJ (2014). Enhanced peripheral visual processing in congenitally deaf humans is supported by multiple brain regions, including primary auditory cortex. Front. Hum. Neurosci. 8:177. doi: 10.3389/fnhum.2014.00177 - See more at:

Shi X, Zhang F, Urdang Z, Dai M, Neng L, Zhang J, Chen S, Ramamoorthy S, Nuttall AL. Thin and open vessel windows for intra-vital fluorescence imaging of murine cochlear blood flow. Hear Res. 2014 Jul;313:38-46. doi: 10.1016/j.heares.2014.04.006. Epub 2014 Apr 26. PMID:  24780131 [PubMed - in process]

Siler DA, Gonzalez JA, Wang RK, Cetas JS, Alkayed NJ. Intracisternal administration of tissue plasminogen activator improves cerebrospinal fluid flow and cortical perfusion after subarachnoid hemorrhage in mice.Transl Stroke Res. 2014 Apr;5(2):227-37. doi: 10.1007/s12975-014-0329-y. Epub 2014 Feb 14. PMID:    24526376    [PubMed - in process]

Siler DA, Martini RP, Ward JP, Nelson JW, Borkar RN, Zuloaga KL, Liu JJ, Fairbanks SL, Raskin JS, Anderson VC, Dogan A, Wang RK, Alkayed NJ, Cetas JS. Protective Role of P450 Epoxyeicosanoids in Subarachnoid Hemorrhage.Neurocrit Care. 2014 Sep 18. [Epub ahead of print] PMID:  25231529 [PubMed - as supplied by publisher]

Tarlow BD, Finegold MJ, Grompe M. Clonal tracing of Sox9(+) liver progenitors in mouse oval cell injury. Hepatology. 2014 Jul;60(1):278-89. doi: 10.1002/hep.27084. Epub 2014 May 28. PMID: 24700457

Tarlow BD, Pelz C, Naugler WE, Wakefield L, Wilson EM, Finegold MJ, Grompe M. Bipotential Adult Liver Progenitors Are Derived from Chronically Injured Mature Hepatocytes. Cell Stem Cell. 2014 Oct 8. pii: S1934-5909(14)00399-3. doi: 10.1016/j.stem.2014.09.008. [Epub ahead of print] PMID: 25312494   [PubMed - as supplied by publisher]

Terker AS, Yang CL, McCormick JA, Meermeier NP, Rogers SL, Grossmann S, Trompf K, Delpire E, Loffing J, Ellison DH. Sympathetic stimulation of thiazide-sensitive sodium chloride cotransport in the generation of salt-sensitive hypertension. Hypertension. 2014 Jul;64(1):178-84. doi: 10.1161/HYPERTENSIONAHA.114.03335. Epub 2014 May 5. PMID: 24799612    [PubMed - indexed for MEDLINE]

Traer E, Javidi-Sharifi N, Agarwal A, Dunlap J, English I, Martinez J, Tyner JW, Wong M, Druker BJ. Ponatinib overcomes FGF2-mediated resistance in CML patients without kinase domain mutations. Blood. 2014 Mar 6;123(10):1516-24. doi: 10.1182/blood-2013-07-518381. Epub 2014 Jan 9.  PMID:  24408322    [PubMed - indexed for MEDLINE]

Zelaya JE, Goenezen S, Dargon PT, Azarbal A-F, Rugonyi S (2014) Improving the Efficiency of Abdominal Aortic Aneurysm Wall Stress Computations. PLoS ONE 9(7): e101353. doi:10.1371/journal.pone.0101353

2013--pubs more than a year old are only listed if they're first author pubs.

Braun TP, Grossberg AJ, Krasnow SM, Szumowski M, Zhu XX, Levasseur PR, Maxson JE, Barnes AP, Marks DL. (2013) Cancer- and Endotoxin-Induced Cachexia Require Intact Glucocorticoid Signaling in Skeletal Muscle. FASEBJ. 27(9):3572-82. PMCID: PMC3752537

Hornick N and Kurre P. Letting Physiology Guide the Discovery of MicroRNA Regulators of Hematopoiesis. The Hematologist; Jan/Feb 2013. Review.

Riddle A, Maire J, Cai V, Nguyen T, Gong X, Hansen K, Grafe MR, Hohimer AR, Back SA. Hemodynamic and metabolic correlates of perinatal white matter injury severity. PLoS One. 2013 Dec 11;8(12):e82940. doi: 10.1371/journal.pone.0082940. eCollection 2013. PMID:  24416093    [PubMed - indexed for MEDLINE] 

Scott G, Fryer AD, Jacoby DB.  (2012)  Quantifying nerve architecture using three-dimensional computational mapping; application to lung, esophagus, skin and intestine. Am J Respir Cell Mol Biol. 2013  PMCID:PMC3547082[Available on 2014/1/1]

Tormoen GW, Recht O, Gruber A, Levine RL, McCarty OJ. Phosphatidylserine index as a marker of the procoagulant phenotype of acute myelogenous leukemia cells. Phys Biol. 2013 Oct;10(5):056010. doi: 10.1088/1478-3975/10/5/056010. Epub 2013 Oct 8. PMID:  24104188    [PubMed - indexed for MEDLINE] 

Williams-Karnesky RL*, Sandau US*, Lusardi TA*, Lytle NK, Farrell JM, Pritchard EM, Kaplan DL, Boison D. Epigenetic changes induced by adenosine augmentation therapy prevent epileptogenesis J Clin Invest. 2013; doi:10.1172/JCI65636  PMID:   23863710 [PubMed - as supplied by publisher]

Williamson DM, Elferich J, Ramakrishnan P, Thomas G, Shinde U. The Mechanism by Which a Propeptide-encoded pH Sensor Regulates Spatiotemporal Activation of Furin". J Biol Chem. 2013 Jun 28;288(26):19154-65. doi: 10.1074/jbc.M112.442681. Epub 2013 May 7. PMCID:PMC3696682012

Zachman DK, Leon RP, Das P, Goldman DC, Hamlin KL, Guha C, Fleming WH. Endothelial cells mitigate DNA damage and promote the regeneration of hematopoietic stem cells after radiation injury. Stem Cell Res. 2013 Nov;11(3):1013-21. doi: 10.1016/j.scr.2013.07.001. Epub 2013 Jul 16. PMID:  23939266


Berlow YA, Pollaro J, Krisky C, Snodgrass M, Kohout K, Lewis MS, Wilmington D, Hutter M, Casiana L, Fitzpatrick M, Lilly DJ, Fausti S, Folmer R, Bourdette D, and Rooney WD.  MRI Correlates of Dichotic Listening Performance in Multiple Sclerosis.  Seminars in Hearing. 2012; 33(3):283-294

Braun TP, Grossberg AJ, Veleva-Rotse BO, Maxson JE, Szumowski M, Barnes AP, Marks DL. Neuronal Expression of Myeloid Differentiation Factor 88 Is Not Requisite for the Induction of Sickness Behavior by Interleukin-1ß. J Neuroinflammation 9(1):229 (2012). PMCID: PMC3488557

Cleary DR, Phillips RS, Wallisch M, Heinricher MM. (2012). A novel, noninvasive method of respiratory monitoring for use with stereotaxic procedures. J.Neurosci. Methods 209(2), 337-343 PMCID:PMC3429636[Available on 2013/8/15]

Mimoto MS, and Christian JL. Friend of GATA (FOG) interacts with the Nucleosome Remodeling and Deacetylase Complex (NuRD) to support primitive erythropoiesis in Xenopus laevis. PLoS One. 2012 Jan;7(1):e29882.

Pratt EB, Zhou Q, Gay JW, Shyng SL. Engineered interaction between SUR1 and Kir6.2 that enhances ATP sensitivity in KATP channels.  August 6 2012, Journal of General Physiology. PMCID: PMC3409095

Riddle A, Maire J, Gong X, Kroenke CD, Hohimer AR, Back SA. Differential susceptibility to axonopathy in necrotic and non-necrotic perinatal white matter lesions. Stroke. 2012 Jan;43(1):178-84. Epub 2011 Nov 10. PMCID:PMC3246543

Su K, Bourdette D, Forte M. Genetic inactivation of mitochondria-targeted redox enzyme p66ShcA preserves neuronal viability and mitochondrial integrity in response to oxidative challenges. Front Physiol. 2012;3:285. doi: 10.3389/fphys.2012.00285. Epub 2012 Jul 20. PMCID:PMC3401197

Tormoen GW, Cianchetti FA, Bock PE and McCarty OJT (2012) Development of coagulation factor probes for the identification of procoagulant circulating tumor cells. Front. Oncol. 2012; 2: 110(1-12). PMCID: PMC3434442.

Walker JM, Raué HP, Slifka MK. Characterization of CD8+ T cell function and immunodominance generated with an H2O2-inactivated whole virus vaccine.  Journal of virology 86:13735–13744.  PMC3503040

Dillon SL*, Williamson DM*, Elferich J, Radler D, Joshi R, Thomas G, Shinde U. Propeptides are sufficient to regulate organelle-specific pH-dependent activation of furin and proprotein convertase 1/3. J Mol Biol. 2012 Oct 12;423(1):47-62. doi: 10.1016/j.jmb.2012.06.023. Epub 2012 Jun 25. PMC3444655, *contributed equally.