OHSU

Select Presentations

Expanding the Clinical Phenotype Space with Semantics and Model Systems. Haendel M. Updates in Clinical Genetics, Vancouver, BC, Canada, March 2014.

Across the Cycle and Beyond the PDF: Libraries and Librarians Transforming Scholarly Communication. Champieux R.  Electronic Resources & Libraries Conference. Austin, TX. March 2014.

Tales From the Crypt: Do you know were your data’s been. Haendel M. Rocky Mountain Bioinformatics Conference. Aspen, CO, December 2013.

The integrated cross-species phenome as a tool for understanding disease. Haendel M. Intrafrontier IMPC-IKMC, Rome, Italy, December 2013.

Data Management Open House. Haendel M, Vasilevsky N, Wirz J and Champieux R. OHSU, Portland, OR. October 2013.

Data Management 101. Vasilevsky N, Wirz J and Haendel M. OHSU PMCB Retreat, Portland, OR. September 2013.

Integrated Semantic Framework: launching the next generation VIVO ontology.E Bremer, J Corson-Rikert, M Haendel, J Hajagos, B Lowe. VIVO conference St Louis, MO. August 2013.

From EHRs to Linked Data: representing and mining encounter data for clinical expertise evaluationCarlo Torniai, PhD, Shahim Essaid, MD, Chris Barnes, Mike Conlon, PhD, Stephen Williams, Janos G. Hajagos, PhD, Erich Bremer, Jon Corson-Rikert and Melissa Haendel, PhD. AMIA TBI, San Francisco, CA. 2013.

Levering Ontologies for research reproducibility, resource sharing, and researcher networking.Carlo Torniai and Melissa Haendel. AMIA TBI, San Francisco, CA. 2013.

The eagle-i Network: enabling research resource discovery Haendel MA. e-Science Institute. University of Utah, Salt Lake City, UT. March 2013.

On the Reproducibility of Science Haendel MA.  Beyond the PDF, Amsterdam, NL. March 2013.

The CTSAconnect project and social entities Essaid S. The University at Buffalo Graduate Seminar: Problems in Ontology. November 2012.

Connecting researchers and research resources using eagle-i and other networking tools Haendel MA. Western Association of Core Directors meeting in Portland, OR. November 2012.

ShareCenter: Integrating VIVO with a Drupal-based platform that facilitates organic sharing across boundariesChris Kelleher, Will Corbett, Erich Bremer, Melissa Haendel.VIVO conference, Miami, FL. 2012.

CTSAconnect: A Linked Open Data approach to represent clinical and research expertise, activities, and resources. Melissa Haendel, Chris Kelleher, Stephen Williams, Janos Hajagos, Erich Bremer. VIVO conference. VIVO conference, Miami, FL. 2012.

From billing codes to expertise: mining, representing and sharing clinical research profiles in the Linked Open Data Cloud Carlo Torniai, Shahim Essaid, Chris Barnes, Stephen Williams, Janos Hajagos Nicole Vasilevsky, Melissa Haendel. VIVO conference, Miami, FL., 2012.

CTSAconnect Melissa Haendel et al. NCBO conference. Baltimore, MD. 2012.

CTSAconnect: Science of Team ScienceChris Kelleher. Science of Team Science meeting. Chicago, IL. 2012.

Research resources: curating the new eagle-i discovery system Nicole Vasilevsky, et al. International Society for Biocuration conference. Washington, DC. 2012.

CTSAconnect OverviewChris Kelleher. CTSA Social Network Analysis Workshop. UC Davis, Davis, CA. 2012.

Development and Application of ReO: A Biomedical Research Reagent Ontology. Brush MH. Plenary talk at the National Library of Medicine Training Conference, Madison, WI. 2012

Developing an application ontology for biomedical resource annotation and retrieval: challenges and lessons learned.CTSA Social Network Analysis Workshop. UC Davis, Davis, CA. 2012.

Modularization for the Cell Ontology.CJ Mungall, M Haendel, A Ireland, S Manzoor, T Meehan, D Osumi-Sutherland, C Torniai, A Diehl. ICBO, Buffalo, NY. 2011.

eagle-i: An Ontology-Driven Framework For Biomedical Resource Curation And DiscoveryCE Segerdell, ML Wilson, T Bashor, D Bourges-Waldegg, K Corday, HR Frost, et al. Nature Publishing Group 2010.