Photo of Shannon McWeeney, Ph.D.

Shannon McWeeney Ph.D.

  • (503) 494-8347
    • Professor of Medicine School of Medicine
    • Biomedical Informatics Graduate Program School of Medicine

Statistical Genetics, Computational Biology, Network Reconstruction, Statistical Methodology for functional genomics data, data cleaning and data integration

Education

  • Ph.D., University of California, Berkeley California 2000
  • Residency:

    • PhD (2000) University of California, Berkeley, Statistical GeneticsMSE (2002) University of Pennsylvania, Computational Biology

Publications

  • "A microRNA screen identifies the Wnt signaling pathway as a regulator of the interferon response during flavivirus infection." Journal of Virology In: , Vol. 91, No. 8, e02388-16, 01.04.2017.
  • "Identification of Interleukin-1 by Functional Screening as a Key Mediator of Cellular Expansion and Disease Progression in Acute Myeloid Leukemia." Cell Reports  In: , Vol. 18, No. 13, 28.03.2017, p. 3204-3218.
  • "REST corepressors RCOR1 and RCOR2 and the repressor INSM1 regulate the proliferation- differentiation balance in the developing brain." Proceedings of the National Academy of Sciences of the United States of America  In: , Vol. 114, No. 3, 17.01.2017, p. E406-E415.
  • "Effects of selection for ethanol preference on gene expression in the nucleus accumbens of HS-CC mice." Genes, Brain and Behavior In: , 2017.
  • "On the relationships in rhesus macaques between chronic ethanol consumption and the brain transcriptome." Addiction Biology  In: , 2017.
  • "Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics." Journal of Bone and Mineral Research In: , 2017.
  • "A Mouse Model of Chronic West Nile Virus Disease." PLoS Pathogens In: , Vol. 12, No. 11, e1005996, 01.11.2016.
  • "The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus." BMC Systems Biology In: , Vol. 10, No. 1, 93, 23.09.2016.
  • "Cover Image, Volume 171B, Number 6, September 2016." American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics  In: , Vol. 171, No. 6, 01.09.2016, p. 1.
  • "Does the urinary microbiome play a role in urgency urinary incontinence and its severity?" Frontiers in Cellular and Infection Microbiology  In: , Vol. 6, No. JUL, 78, 27.07.2016.
  • "HitWalker2 : Visual analytics for precision medicine and beyond." Bioinformatics  In: , Vol. 32, No. 8, 15.04.2016, p. 1253-1255.
  • "IL-10 and integrin signaling pathways are associated with head and neck cancer progression." BMC Genomics  In: , Vol. 17, No. 1, 38, 08.01.2016.
  • "Identification and characterization of tyrosine kinase nonreceptor 2 mutations in leukemia through integration of kinase inhibitor screening and genomic analysis." Cancer Research In: , Vol. 76, No. 1, 01.01.2016, p. 127-138.
  • "Pathway analysis in attention deficit hyperactivity disorder : An ensemble approach." American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics  In: , 2016.
  • "Diversity outbred mice at 21 : Maintaining allelic variation in the face of selection." G3: Genes, Genomes, Genetics In: , Vol. 6, No. 12, 2016, p. 3893-3902.
  • "Combined targeting of SET and tyrosine kinases provides an effective therapeutic approach in human T-cell acute lymphoblastic leukemia." Oncotarget  In: , Vol. 7, No. 51, 2016, p. 84214-84227.
  • "Between pathways and networks lies context : Implications for precision medicine." Science Progress  In: , Vol. 98, No. 3, 01.09.2015, p. 253-263.
  • "Use of semantic workflows to enhance transparency and reproducibility in clinical omics." Genome Medicine In: , Vol. 7, No. 1, 73, 25.07.2015.
  • "Therapeutically targetable ALK mutations in leukemia." Cancer Research In: , Vol. 75, No. 11, 01.06.2015, p. 2146-2150.
  • "Human Cytomegalovirus miR-UL112-3p Targets TLR2 and Modulates the TLR2/IRAK1/NFκB Signaling Pathway." PLoS Pathogens In: , Vol. 11, No. 5, e1004881, 01.05.2015.
  • "plethy : Management of whole body plethysmography data in R." BMC Bioinformatics In: , Vol. 16, No. 1, 134, 29.04.2015.
  • "Splicing landscape of the eight collaborative cross founder strains." BMC Genomics  In: , Vol. 16, No. 1, 52, 05.02.2015.
  • "Maternal high-fat diet and obesity compromise fetal hematopoiesis." Molecular Metabolism In: , Vol. 4, No. 1, 01.01.2015, p. 25-38.
  • "Limited clinical utility of a genetic risk score for the prediction of fracture risk in elderly subjects." Journal of Bone and Mineral Research  In: , Vol. 30, No. 1, 01.01.2015, p. 184-194.
  • "Influenza Vaccination of Pregnant Women : Attitudes and Behaviors of Oregon Physician Prenatal Care Providers." Maternal and Child Health Journal  In: , Vol. 19, No. 4, 2015, p. 783-789.
  • "Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations." Frontiers in Genetics  In: , Vol. 6, No. MAY, 174, 2015.
  • "'Pitfalls in the application of gene set analysis to genetics studies' : A response." Trends in Genetics  In: , Vol. 30, No. 12, 01.12.2014, p. 514-515.
  • "Dual-Trait Selection for Ethanol Consumption and Withdrawal : Genetic and Transcriptional Network Effects." Alcoholism: Clinical and Experimental Research In: , Vol. 38, No. 12, 01.12.2014, p. 2915-2924.
  • "BCR-ABL1 promotes leukemia by converting p27 into a cytoplasmic oncoprotein." Blood In: , Vol. 124, No. 22, 20.11.2014, p. 3260-3273.
  • "A comprehensive collection of systems biology data characterizing the host response to viral infection." Scientific data In: , Vol. 1, 140033, 14.10.2014.

Additional information

Edit profile