Genetics Research

Laboratory Services in Genetics

• DNA Sequencing
  • OCTRI Core Laboratory
  • MMI Core Facility
• Oligonucleotide synthesis
  • MMI Oligo synthesis
• Polymorphism detection
  • OCTRI Core Laboratory
  • Molecular Diagnostic Center
  • Gene Microarray Shared Resource
  • MMI Core Facility
• Gene Expression Profiling
  • Gene Microarray Shared Resource
  • Illumina Microarray Core
• Cytogenetics Research Services
  • MMG Research Cytogenetics Laboratory

HIGHLIGHTED OHSU GENETICS RESEARCH RESOURCES

• Portland Alcohol Research Center
• Oregon Stem Cell Center

To search through a database of research being done here at OHSU by publication, project or researcher, visit the OHSU Research Directory.

Agencies and Major Access Sites

• Baylor College of Medicine Human Genome Sequencing Center
• Molecular Biology Gateway to the WWW
• The National Center for Biotechnology Information (NCBI)
• National Institute of Health (NIH)
• National Science Foundation (NSF)
• National Academy of Sciences, Institute of Medicine, National Research Council
• U. S. Bureau of the Census
• United States Patent and Trademark Office
• DNA Patent Database
• Sequence Retrieval System - European Bioinformatics Institute
• Health Effects and Life Sciences Research Division DOE

Genome Projects and Databases

• Zebrafish Genome Resources
• UCSC Genome Bioinformatics
• Entrez Search NCBI Databases
• Online Mendelian Inheritance in Man OMIM
• Mouse Genome Informatics The Jackson Laboratory
• Trans-NIH Mouse Initiative
• FlyBase: a Database of the Drosophila Genome
• The Drosophila Virtual Library
• The Interactive Fly
• Berkeley Drosophila Genome Project BDGP
• Maize Genome Database: MaizeDB
• Arabidopsis Information Resource
• Caenorhabditis elegans UT SW Medical Center at Dallas
• Rice Genome Research Program RGP Japan
• HOBACGEN Homologous Bacterial Genes Database
• The Dog Genome Project UCB, UO and FHCRC
• Horse Genetics UCD
• Cattle Genome Mapping Project USDA
• Human Genome Mapping Project Resource Centre (MRC, UK)
• Human Genome Program U.S. Dept. of Energy
• Human Genome Project Information DOE at ORNL
• National Human Genome Research Institute NHGRI (NIH)
• The Genome Data Base GDB
• Genethon's Gopher Server
• DNA Data Bank of Japan
• Biocatalysis/Biodegradation U. Minnesota.
• Brown Trout population genetics research
• Human and great ape mitochondrial DNA (mtDNA)
• Saccharomyces Genome Database Stanford
• EcoCyc and MetaCyc Encyclopedia of E. coli genes and metabolism
• The Protein Information Resource PIR - NBRF
• National Biomedical Research Foundation NBRF
• Munich Information Center for Protein Sequences MIPS
• SWISS-PROT Annotated protein sequence database
• Mirror in Canada
• Protein Data Bank (3D Macromolecular Structures) RCSB
• NCBI dbEST
• Prosite - searchable index
• HUGO Mutation Database Initiative
• GenomeNet, Kyoto Univ. and Univ. of Tokyo, Japan
• CGSC: E.coli Genetic Stock Center Yale
• MONET/MOL National Institute of Genetics Japan
• JGI DOE Joint Genome Institute (Human Chromosomes 5, 16, 19)
• Human Genome Sequencing NCBI
• Organism-Specific Databases a directory

Genomics

• Agricultural Genomes USDA-ARS Center for Bioinformatics and Comparative Genomics, Cornell U.
• National Center For Genome Resources
• Stanford Genomic Resources
• Genome Research Whitehead Institute
• Completed Genomes Search and Analysis BMERC - Boston Univ.
• Biological sequence analysis Fred Hutchinson Cancer Research Center
• Molecular Evolution and Organelle Genomics U. of Montreal
• The Institute for Genomic Research TIGR
• USDA-ARS Center for Bioinformatics and Comparative Genetics
• Genomics: A Global Resource - PhRMA and AIBS
• Genome Information Broker for Microbial Genomes NIG Japan
• Molecular Systematics and Evolution of Microorganisms Course The Natural History Museum, London and Instituto Oswaldo Cruz, Rio de Janeiro
• KEGG Kyoto Encyclopedia of Genes and Genomes

Searching and Tools

• BCM Search Launcher - molecular biology-related search & analysis services
• BCM Sequence Annotation Server Add/Share Annotations
• Database and Search Tools Baylor
• PROSITE Database of protein families and domains
• ENZYME Enzyme nomenclature database
• The Genetic Location Database (LDB)Map construction and other Genetic Epidemiology
• Genetree ancestral inference from DNA sequences
• PEDANT: Protein Extraction, Description, and ANalysis Tool
• What Is There (WIT) Metabolic Reconstruction (registration required)
• Molecular Biology Tools
• Bioinformatics and Biological Computing Weizmann Institute
• Maximum Likelihood Analysis for Nucleotide, Amino Acid, and Two-State Data (source code for TREE-PUZZLE)
• StatLib Index CMU - statistical software, datasets, and info
• GAMS : Guide to Available Mathematical Software NIST
• Optimization Technology Center Argonne National Lab
• North Carolina Supercomputing Center
• FASTA comparison programs Univ. of Virginia
• "Panning for genes" Univ. of Virginia (see: Retief, J. D., Lynch, K. R., and Pearson, W. R. (1999) Panning for genes - a visual strategy for identifying novel gene orthologs and paralogs. Genome Res. 9:373-382)
(Demonstrations (PDF documents): GT; GTM; GSTN_old; GSTN_new
• COMPARE 4.0 phylogenetic analysis of comparative data
• Biology WorkBench sequence database searching and modelling - SDSC

Research Centers

• Galton Laboratory London
• Dept of Molecular & Cellular Biology Harvard
• Washington U. Institute for Biomedical Computing
• ASRI Department of Human Genetics
• THE SANGER CENTRE Hinxton, Camb.
• Genomic Reagents Resource Cedars-Sinai Medical Center
• European Bioinformatics Inst. (EBI) Hinxton, Camb. - the EMBL Outstation
• EBI's database server
• DNA & Protein Analysis Toolkit Rockefeller University
• Computational Biology Group ANL

Research Groups

• Computational Ecology Yale
• Cavalli Lab Human Population Genetics - Stanford Univ.
• Gilbert Lab - Bioinformatics Group Harvard
• George Church Lab and Lipper Center - Computational Genetics
• Bioinformatics Group ANU
• Caltech Genome Research Laboratory)
• Behavior, Speciation and Genetics Group St. Andrews

Other Information Resources

• Access Excellence sponsored by Genentech, Inc.
  Biology Teaching and Learning (high school emphasis)
• Human Molecular Genetics (HUM-MOLGEN)
• Ethics and Genetics
  Center for Bioethics - U. Penn.
• EMBnet
  European Molecular Biology network
• NetBiochem Welcome Page - Med Biochem AUHS
• Ribonuclease P Database
  sequences, alignments, secondary structures, other info
• The Tree of Life
• National Action Plan on Breast Cancer (NAPBC)
• LIFE Natural History - CSU Australia
• Careers in Science and Engineering A Student Planning Guide to Grad School and Beyond
• Main Metabolic Pathways
• WebElements Periodic Table
• Calculate characteristics of single stranded nucleic acid
  Schepartz Lab Biopolymer Calculator
• Viruses
  • Virus Databases Australian National University
  • All the Virology on the WWW Tulane University