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Microarray Resources
(under construction) |
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The BBC provides biostatistical and bioinformatics data analysis
and development support and services to the GMSR core laboratories
as well as to OHSU microarray investigators.
Summary
of services available |
| Statistical
Services |
Development
Services |
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Consultation
on experimental design and sample size
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Database
development |
| Assistance
on grant or protocol submission (e.g., preparing
statistical analysis plan) |
Application development (e.g., custom applications,
data manipulation scripts) |
| Data
management and preparation for data analysis
(e.g., pre-processing, treatment of replications
and normalization) |
Web development |
| Data analysis, interpretation and report preparation.
This includes data annotation (gene description,
gene ontology functions, pathway information)
and data visualization |
Assistance
on grant or protocol submission (e.g., preparing
database or hardware resources descriptions) |
| Manuscript
review and preparation |
Manuscript
review and preparation |
| Advanced
training on microarray analysis |
Data
manipulation |
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Specific
services provided to cores and groups |
Support to the SMC and AMC Cores includes:
- Database development and maintenance (AMCDB and
SMCDB)
- Protocol development and implementation (Pre-Processing
Protocol etc)
- Low-level analysis
- Methodolgical development
- Web development
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Support to the GMSR Investigators include:
- Free 15 minute statistical consultation
- Free assistance with experimental design for GMSR
experiments
- Free consultation on data file formats and using
the web interfaces for the Core databases after an
experiment is completed
- Free 1.5 hour individual tutorial / training.
Topics include: Data Filtering with Excel, Preliminary
Analysis with Statistica, Visualization with Omniviz,Understanding
Genesight etc.
- Free
use of the Bioinformatics Suite (By appointment
only)
- Free workshops on microarray data analysis (3 per
year)
- Biostatistical and Bioinformatic data analysis
(on a charge-back basis*)
- Grant preparation assistance (on a charge-back
basis*)
- Protocol and manuscript preparation assistance
(on a charge-back basis*)
- Individual data preparation and management (on
a charge-back *)
- Development of Web-based databases for individuals
or consortiums (on a charge-back basis*)
- Development of specific bioinformatic tools and
software (on a charge-back basis*)
- Assistance with MIAME compliance for publication
(on a charge-back basis*)
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Services to non-GMSR investigators include:
- Biostatistical and Bioinformatic data analysis
(on a charge-back*)
- Grant assistance (on a charge-back basis*)
- Protocol and manuscript preparation assistance
(on a charge-back basis*)
- Individual data preparation and management (on
a charge-back basis *)
- Development of web-based databases for individuals
or consortiums (on a charge-back basis*)
- Development of specific bioinformatic tools and
software (on a charge-back basis*)
- Assistance with MIAME compliance for publication
(on a charge-back basis*)
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*Please refer to BBC Polices for
information about charge-back rates.
To request a consultation, please review the
BBC policies and fill out the request form
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Support
& Services