• Vartanian K.A., Slottke R, Shi T, Tobar E, Stevens S, Stenzel-Poore M, Harrington C.A, Test of Commercially Available Globin Depletion Protocol And Alternative Labeling Method Using A Rodent Blood Model . Affymetrix User Group Meeting. May 2006
  

• Vartanian K.A., Paik H, Runyan C, Crossman L, Deininger M, Harrington C.A, Factors Influencing the Optimization and Standardization of the Affymetrix GeneChip Expression Assay Small Sample Amplification Protocol in the Microarray Core Laboratory Affymetrix User Group Meeting. May 2005
  

• Vartanian K.A., Tompkins B, Paik H, Runyan C Harrington C.A, Quality Control in Affymetrix Microarray Core Laboratory. Affymetrix User Group Meeting. May 2004 and ABRF Conference 2004
  

• Beth Wilmot, Shannon K. McWeeney, Randal R. Nixon, Thomas J. Montine, Jamie Laut, Christina A. Harrington, Jeffrey A. Kaye and Patricia L. Kramer. Translational gene mapping of cognitive decline. Neurobiology of Aging, Volume 29, Issue 4, April 2008, Pages 524-541

• Bogan RL, Murphy MJ, Stouffer RL, Hennebold JD. Systematic determination of differential gene expression in the primate corpus luteum during the luteal phase of the menstrual cycle. Mol. Endocrinol. 2008 Feb. 7
  [The microarray data was also downloaded to the GEO database at accession number GSE10367 ]

• Smith JR, Choi D, Chipps TJ, Pan Y, Zamora DO, Davies MH, Babra B, Powers MR, Planck SR, Rosenbaum JT. Unique gene expression profiles of donor-matched human retinal and choroidal vascular endothelial cells. Invest Ophthalmol Vis Sci. 2007 Jun;48(6):2676-84

• J. A. Byrne, D. A. Pedersen, L. L. Clepper, M. Nelson, W. G. Sanger, S. Gokhale, D. P. Wolf & S. M. Mitalipov. Producing primate embryonic stem cells by somatic cell nuclear transfer. Nature 450, 497-502 (22 November 2007)

• Walter NA, McWeeney SK, Peters ST, Belknap JK, Hitzemann R, Buck KJ. SNPs matter: impact on detection of differential expression. Nat Methods. 2007 Sep;4(9):679-80

• Cheng J, Alkayed NJ, Hurn PD. Deleterious effects of dihydrotestosterone on cerebral ischemic injury. J Cereb Blood Flow Metab. 2007 Sep;27(9):1553-62.

• DeFilippis, V.R., Robinson, B., Keck, T.M., Hansen, S.G., Nelson, J.A. and Früh, K."Interferon regulatory factor 3 is necessary for induction of antiviral genes during human cytomegalovirus infection." J Virol 2006; 80, 1032-1037

• Rose, P.P., Carroll, J.M., Carroll, P.A., Defilippis, V.R., Lagunoff, M., Moses, A.V., Roberts, C.T., Jr. and Fruh, K. "The insulin receptor is essential for virus-induced tumorigenesis of Kaposi's sarcoma". Oncogene. (2006)

• Kuninger, D., Stewart, A. and Rotwein, P. "Muscle cell survival mediated by the transcriptional co-activators p300 and PCAF displays different requirements for acetyl-transferase activity." Am J Physiol Cell Physiol. 2006 May 3; [Epub ahead of print] PMID: 16672693

• Raggo C, Ruhl R, McAllister S, Koon H, Dezube BJ, Fruh K, Moses AV.. Novel cellular genes essential for transformation of endothelial cells by Kaposi's sarcoma-associated herpesvirus. Cancer Research 2005 Jun 15;65(12):5084-95

• Stenzel-Poore MP, Stevens SL, Simon RP.. Genomics of preconditioning. Stroke 35(11 Suppl 1):2683-6, Nov 2004

• Crossman LC, Mori M, Hsieh YC, et al.. In chronic myeloid leukemia white cells from cytogenetic responders and non-responders to imatinib have very similar gene expression signatures. Haematologica 90(4):459-64 , Apr 2005.

• Howie HL, Glogauer M, So M.. The N. gonorrhoeae Type IV Pilus Stimulates Mechanosensitive Pathways and Cytoprotection through a pilT-Dependent Mechanism. PLoS Biol. 3(4):e100 , Mar 22 2005.

• Impey S, McCorkle S, Cha-Molstad H, et al. Defining the CREB Regulon: A Genome-Wide Analysis of Transcription Factor Regulatory Regions. Cell. 119(7):1041-1054 , Dec. 29 2004.

• Kuninger D, Kuzmickas R, Peng B, et al. Gene discovery by microarray: identification of novel genes induced during growth factor-mediated muscle cell survivial and differentiation. Genomics. 84(5):876-89, Nov. 2004.

• Hitzemann, R, Reed C, Malmanger B, et al. On the Integration of Alcohol-Related Quantitative Trait Loci and Gene Expression Analyses. Alcoholism: Clinical and Experimental Research. 28(10):1437-1448 , October 2004.

• Weinberg AD, Evans DE, Thalhofer C, Shi T, Prell RA. The generation of T cell memory: a review describing the molecular and cellular events following OX40 (CD134) engagement. J Leukoc Biol. 75(6):962-72, June 2004.

• Hitzemann, Malmanger B, Reed C, et al. A strategy for the integration of QTL, gene expression, and sequence analyses Mamm Genome. 14(11):733-47 , November 2003.

• Fass DM, Butler JE, Goodman RH. Deacetylase activity is required for cAMP activation of a subset of CREB target genes. J Biol Chem. 2003 Oct 31;278(44):43014-9.

• P.B Beluska, T. Nakajima, M. Azuma, T.R. Shearer. Expression changes in mRNAs and mitochondrial damage in lens epithelial cells with selenite. Biophysica Acta (BBA) - General Subjects. 2003 Oct 13;1623(2-3):135-142.

• Stenzel-Poore M, Stevens S, Xiong Z, et al. Effect of ischaemic preconditioning on genomic response to cerebral ischaemia: similarity to neuroprotective strategies in hibernation and hypoxia-tolerant states. Lancet. 2003 Sep 27;362(9389):1028-37.

• Tian W, Cohen D. Urea stress is more akin to EGF exposure than to hypertonic stress in renal medullary cells. Am J Physiol Renal Physiol. 2002 Sep;283(3):F388-98.

• Moses A, Jarvis M A, Raggo C, et al. Kaposi's sarcoma-associated herpesvirus-induced upregulation of the c-kit proto-oncogene, as identified by gene expression profiling, is essential for the transformation of endothelial cells. J Virol. 2002 Aug;76(16):8383-99.

• Wang Z, Liu Y, Mori M, et al. Gene expression profiling of initiated epidermal cells with benign or malignant tumor fates. Carcinogenesis. 2002 Apr;23(4):635-43.

Are you and OHSU investigator who has used AMC services and published data from your Genechip array studies? If so, please email us to let us know about your publication so we can post it here.

• Lockhart DJ, Winzeler EA.Genomics, gene expression and DNA arrays. Nature. 2000 Jun 15;405(6788):827-36. Review.

• Harrington CA, Rosenow C, Retief J.Monitoring gene expression using DNA microarrays. Curr Opin Microbiol. 2000 Jun;3:285-291.

• Lipshutz RJ, Fodor SPA, Gingeras TR, Lockhart DJ.High density synthetic oligonucleotide arrays. Nat Genet. 1999 Jan;21:20-24.

• Wodicka L, Dong H, Mittmann M, Ho MH, Lockhart DJ.Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat Biotechnol. 1997 Dec;15(13):1359-67.

• Lee CK, Weindruch R, Prolla TA.Gene-expression profile of the aging brain in mice. Nat Genet. 2000 Jul;25(3):294-7.

• Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 1999 Oct 15;286(5439):531-7.

The references provided here represent only a few of the publications that are available. For a comprehensive list of references on Affymetrix GeneChip expression technology and research studies in which it has been applied, go to the Affymetrix site.