DMICE-Affiliated Faculty, Staff, Fellows, and Students Presenting Their Research During OHSU Research Week 2017, May 1-3, 2017

The DMICE-affiliated faculty, staff, fellows, and students listed below(presenter underlined) are presenting their research as part of OHSU’s 2017 Research Week, which takes place May 1-3, 2017. For the full Research Week schedule, see: https://www.conftool.pro/research-week-2017/sessions.php

Oral Presentation Session 4 

Monday, 01/May/2017:2:30pm – 4:00pm Location: Old Library room 211

A Computational Framework to Analyze Surgical Experience

Mark Engelstad, Quinn Walker, James Morrison

Oral Presentation Session 6 

Monday, 01/May/2017:2:30pm – 4:00pm Location: Old Library room 221

The Evolving Role of Medical Scribe: Variation and Implications for Organizational Effectiveness and Safety

Deborah V Woodcock, Robert Pranaat, Karess McGrath, Joan S Ash

Poster Session A 

Monday, 01/May/2017:4:30pm – 5:30pm Location: OHSU Library / BICC

FIOncoNet: A software tool for localizing somatic mutations within protein-protein binding interfaces

Joshua Garrison Burkhart

Natural Product Targetome in Cancer: Definition and Application

Steve Chamberlin, Aurora Blucher, Gabrielle Choonoo, Molly Kulesz-Martin, Shannon McWeeney

Aggregating common, rare and private variants in Alzheimer’s disease genes

Prerna Das, Beth Wilmot

Transcriptome Characterization of the Collaborative Cross Founder Strains Using RNA-Seq K-mer Content

Julian Egger, Christina Zheng

Controlling for contaminants in low-biomass microbiome experiments

Lisa Karstens, Rahel Nardos, Mark Asquith, Shannon McWeeney

Elucidating Gut Microbiota-immune Interactions in an Animal Model of Ankylosing Spondylitis

Mark T Klick, Lisa Karstens, Sean Davin, Patrick Stauffer, Mark Asquith

Co-targeting epidermal growth factor receptor (EGFR) and anaplastic lymphoma kinase (ALK) overcomes EGFR inhibitor resistance in head and neck squamous cell carcinoma patient-derived models

Xiaoming Ouyang, Ashley Barling, Jeff Tyner, Shannon McWeeney, Molly Kulesz-Martin

LSD1 promotes castration-resistant prostate cancer cell survival independently of the androgen receptor and of histone demethylation

Archana Sehrawat, Lina Gao, Junior Tayou, Armand Bankhead, Laura Heiser, Carly King, Yuliang Wang, Jacob Schwartzman, Joshua Urrutia, Daniel Coleman, Sheila Weinmann, Bhaskar Kallakury, Deborah Berry, Reina Haque, Stephen Eeden, Tomasz Beer, George Thomas, Shannon McWeeney, Joshi Alumkal

Resident Attitudes, Confidence, and Experiences in Leadership: Results from the National Leadership Survey

Jeanne-Marie Guise, Barbara Skarica, Tabria Harrod, Matthew Hansen, Elizabeth Kinsey

Exploration of Operational Data Streams as a Source of Actionable Insight

Dana Womack, Michelle Hribar, Paul Gorman

Improving Retrieval of Datasets: OHSU Participation in the bioCADDIE Evaluation Challenge

Theodore Brady Wright, David Ball, William Hersh

Narratives of Residents’ Experiences of Unconscious Bias: Results of the National Leadership Survey

Jeanne-Marie Guise, Shammarie Mathis, Tabria Harrod, Matthew Hansen

A proof of concept study evaluating the variability and accuracy among scribes’ transcribed notes using EHR integrated simulation

Robert Pranaat, Jeff Gold, Vishnu Mohan, Deborah Woodcock, Maxwell Hirsh, Karess McGrath, Gretchen Scholl, Meg O’Reilly

Poster Session B 

Monday, 01/May/2017:6:00pm – 7:00pm Location: OHSU Library / BICC

Identifying novel biomarkers for Systemic Exertion Intolerance Disease/Chronic Fatigue Syndrome through community profiling of the intestinal microbiota by 16S rRNA gene sequencing

Eric T Leung, Lisa Karstens, Mark Asquith, Beth Smith

A Validated 7-minute Tool to Examine Pediatric Safety & Quality: The Pediatric prehospital safety Event Detection System (PEDS)

Nicole Ovregaard, Carl Eriksson, Garth Meckler, Matt Hansen, Barbara Skarica, Jeanne-Marie Guise

Oral Presentation Session 8 

Tuesday, 02/May/2017:10:00am – 11:30am Location: Old Library room 217

Chromosome Elimination from the Primate Pre-Implantation Embryo Revealed by Single-Cell Sequencing

Brittany L. Daughtry, Jimi L. Rosenkrantz, Nathan Lazar, Suzanne S. Fei, Nash Redmayne, Kristóf Törkenczy, Andrew Adey, Geoffrey Schau, Kimberly A. Nevonen, Lucia Carbone, Shawn L. Chavez

Oral Presentation Session 13 

Wednesday, 03/May/2017:1:00pm – 2:30pm Location: Old Library room 211

Synthetic lethality of TNK2 inhibition in PTPN11-mutant AML

Chelsea Jenkins, Samuel Luty, Julia Maxson, Christopher Eide, Melissa Abel, Corinne Togiai, Eneida Nemecek, Daniel Bottomly, Shannon McWeeney, Beth Wilmot, Marc Loriaux, Bill Chang, Jeffrey Tyner

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About DMICE

The Department of Medical Informatics & Clinical Epidemiology (DMICE) is one of 27 academic departments in the School of Medicine at Oregon Health & Science University (OHSU). The mission of DMICE is to provide leadership, discovery and dissemination of knowledge in clinical informatics, clinical epidemiology, and bioinformatics / computational biology. This mission is fulfilled through programs of research, education, and service. For more information, visit http://www.ohsu.edu/informatics

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