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Lab Intranet
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Each page for the eight TMS shows results of the following analyses:
- The positions of the transmembrane segments (TMS) were predicted with
GCG Wisconsin Package’s TransMem program for human, mouse, rat, and
sheep WNDP. Predicted TMS for each sequence are shaded in blue.
- The boundaries of WNDP TMS were proposed based on the comparison
of the predicted TMS in the alignment and are recorded on the top
of the TMS pages.
- Helical wheels were produced for each predicted TMS with WinPep. In each
helical wheel, the labels of polar residues are in blue,
while other residues are labeled in black.
Polarity summary:
TM segments 2,3,5,6, and 8 have more than three polar residues, and TM segments
1,4,7 have three or fewer polar residues.
TM segments 1,2,4,7, and 8 have polar residues clustered on one side.
TM segment 3,5,6 have polar residues across all sides.
Invariantly conserved residues summary:
There are no residues that are invariantly conserved residues across
copper transporters in TM segments 1, and 5.
There are three or fewer invariantly conserved residues in TM segments
2, 3, 4, 6, and 8.
There are many invariantly conserved residues in TM segment 7.
WNDP mutations summary:
There are identified mutations in all TM segments.
There are two or fewer WNDP mutation sites in TM segments 1, 3, 4,
and 7.
There are more than four WNDP mutation sites in TM segments 2, 5, 6,
and 8.
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Designed and maintained
by Tina D. Purnat (purnatt@ohsu.edu).
Last update: July 25, 2004.
The Lutsenko Laboratory, Department
of Biochemistry and Molecular Biology, MRB 624, Mail Code L224,
Oregon Health & Science University, 3181 SW Sam Jackson Pk Rd, Portland,
OR 97239-3098
503-494-7501 (tel), 503-494-8393 (fax)
This material is based upon work supported by
the National Science Foundation
under grant number MCB-0110057. Any opinions, findings, and conclusions
or recommendations expressed
in this material are those of the author(s) and do not necessarily
reflect the views of the National Science Foundation.
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